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Detailed information on CNT30606042


BLAST search results

BLAST vs Swiss-Prot:
sp|P40283|H2B11_ARATH, E-value = 1e-35

BLAST vs NONCODE:
NONSTUT002391, E-value = 2e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Gossypium raimondiiOryza sativa39.6719.1285.12121forward
CNT30675823Gossypium raimondiiSetaria viridis53.4437.5682.82163forward
CNT30522940Gossypium raimondiiSetaria italica39.0216.984.03119forward
CNT30315505Gossypium raimondiiCorylus avellana53.4435.6785.89163forward
CNT30518188Gossypium raimondiiJuglans regia53.4418.590.8163forward
CNT30702570Gossypium raimondiiQuercus lobata43.6126.690.23133forward
CNT3072234Gossypium raimondiiQuercus suber38.3618.5788.03117forward
CNT30381273Gossypium raimondiiManihot esculenta53.1145.3885.8162forward
CNT3094085Gossypium raimondiiSolanum tuberosum43.2826.1487.12132forward
CNT30179138Gossypium raimondiiSecale cereale39.6714.9983.47121forward
CNT30292924Gossypium raimondiiTriticum aestivum39.6722.4585.12121forward
CNT30220711Gossypium raimondiiHordeum vulgare39.6711.6884.3121forward
CNT30395424Gossypium raimondiiTriticum turgidum39.6725.1683.47121forward
CNT30565715Gossypium raimondiiActinidia chinensis53.4420.7688.96163forward
CNT30586986Gossypium raimondiiMusa acuminata49.5142.6682.12151forward
CNT3086649Gossypium raimondiiVigna radiata41.6417.0289.76127forward
CNT30553165Gossypium raimondiiOryza glaberrima39.6726.385.12121forward
CNT30435607Gossypium raimondiiAegilops tauschii39.6715.3983.47121forward
CNT30244913Gossypium raimondiiAvena sativa40.6619.0285.48124forward
CNT30656000Gossypium raimondiiTriticum dicoccoides53.4427.9181.6163forward
CNT30597299Gossypium raimondiiFraxinus excelsior53.4429.6987.73163forward
CNT30457159Gossypium raimondiiSaccharum spontaneum39.0214.2784.87119forward
CNT30130711Gossypium raimondiiLolium perenne38.6917.3583.9118forward
CNT303693Gossypium raimondiiZea mays39.6735.0783.47121forward
CNT30231835Gossypium raimondiiAnanas comosus41.9719.6986.72128forward
CNT30129800Gossypium raimondiiCorymbia citriodora53.4420.2587.12163forward
CNT30684130Gossypium raimondiiTriticum urartu39.6716.6984.3121forward
CNT30721953Gossypium raimondiiTriticum spelta39.6717.2683.47121forward
CNT30346527Gossypium raimondiiEragrostis tef35.0850.7183.18107forward
CNT30363575Gossypium raimondiiSorghum bicolor39.0212.9184.03119forward
CNT30619778Gossypium raimondiiCajanus cajan42.6219.6490130forward
CNT30596761Gossypium raimondiiOryza meridionalis39.6715.3285.12121forward
CNT30369782Gossypium raimondiiOryza glumipatula39.671984.3121forward
CNT30570929Gossypium raimondiiVitis vinifera42.6219.3790.77130forward
CNT3052765Gossypium raimondiiAmborella trichopoda41.9725.288.28128forward
CNT3024772Gossypium raimondiiPopulus trichocarpa41.3121.2584.13126forward
CNT30327286Gossypium raimondiiAsparagus officinalis43.6114.7188.72133forward
CNT30101075Gossypium raimondiiOryza rufipogon43.6118.9784.96133forward
CNT30574682Gossypium raimondiiOryza barthii39.6717.6984.3121forward
CNT30496069Gossypium raimondiiDigitaria exilis39.6715.1685.12121forward
CNT30176425Gossypium raimondiiVigna angularis45.916.7188.57140forward
CNT30557628Gossypium raimondiiPanicum hallii39.0221.3684.03119forward
CNT30724478Gossypium raimondiiLupinus angustifolius29.1814.7684.2789forward
CNT3065708Gossypium raimondiiSelaginella moellendorffii39.6734.8785.12121forward

Expression of CNT30606042

Peptides detected in this lncRNA

>peptide 1 (32 aa)
WLLVVPRESRSLLSKLLEDIVDETVHDPHSLA*

>peptide 2 (51 aa)
MDLLKDLEDVDLVGLHALLGLLLLLVSGRAAFFGKLLLGFGRHGRFSSGLF*

Sequence

>CNT30606042
GTTGGCTTCTTGTTGTACCTCGCGAGTCTAGAAGCCTCCTGAGCAAGCTTCTCGAAGATATCGTTGATGAAACTGTTCATGATCCCCATAGCCTTGCTTG
AGATCCCGATATCAGGATGGACTTGCTTAAGGACCTTGAAGATGTAGATCTTGTAGGTCTCCACGCTCTTCTTGGCCTTCTTCTTCTTCTTGTCTCCGGC
CGCGCCGCCTTCTTTGGGAAGCTTCTTCTCGGCTTTGGGCGCCATGGTAGATTCTCTTCTGGTTTGTTTTGAGTGGAAGACGATAAATTTTGCACGATTT
TCTGG