Detailed information on CNT30604708


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006119, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692309Oryza punctataOryza sativa30.9170.5994.72701forward
CNT30553434Oryza punctataOryza glaberrima13.7124.391.96311reverse complement
CNT30107954Oryza punctataOryza longistaminata73.63100.9795.991670reverse complement
CNT30102385Oryza punctataOryza rufipogon52.8787.01961199forward
CNT30576960Oryza punctataOryza barthii68.9664.7997.121564reverse complement

Expression of CNT30604708

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MTLIFLVNGIFERSGTQPSVACNSYLQQSNCKLASFSFHQKLTGPNEYAMKQVQNI*

>peptide 2 (50 aa)
MAKSSAASILYISSLENQPMASMYLYPLQDPTQQTSLQVQRNAVLKCSIQ*

>peptide 3 (58 aa)
MFIACISEKFHHSRWQNLQLPPSCTFLLLKINQWHQCIFTLYKILLSRHHCKYREMQY*

>peptide 4 (30 aa)
MMADECSTHRCSRGNHLSTLLPRGSPRRRR*

>peptide 5 (33 aa)
MHHYRGLTNPKKQRFQQNACTINNHLQGYVVSN*

>peptide 6 (33 aa)
MARCLDNGIDIQFDCQMQVDLFAQKLSMNMHSA*

Sequence

>CNT30604708
TTATACCACACCATTTTCAGCCAGTTATATTATATTCATTTATATTAGTATCAAATAACAAGTAGGCTAAGCCCATATAGGCCCAACAATCAAACACAAT
AATAACCCATATAGCACAAAGGTTACAATCAAACACAATAATAACCCATATAGCACAAAGGTTACAACCCATATAGCAACTGGTTCTTCTGATAATGCAC
CATTACAGAGGTCTTACAAACCCAAAAAAACAAAGGTTTCAACAGAATGCATGCACCATCAACAATCACCTACAAGGATATGTTGTATCAAACTAGCAAA
GATATCTGATTCTAAGGTTGCCAAATGTTCATAGCATGTATTTCTGAGAAATTTCACCACTCCAGATGGCAAAATCTTCAGCTGCCTCCATCCTGTACAT
TTCTTCTCTTGAAAATCAACCAATGGCATCAATGTATCTTTACCCTTTACAAGATCCTACTCAGCAGACATCATTGCAAGTACAGAGAAATGCAGTACTG
AAATGCAGTATACAGTAGAGAGAAATCTAATCTAGTTCTCAACAAGCTGACATAGTATACAGTAGAGAGAAAAGTACAGAGAAATGCAGTACTGAATGCA
GCTTGATCACTACAGGAAAGAAACTCTTAAGTTAATTAATTTCAGGCTTAGTTAAAACTACTGGTGCAACTGGGTAAATTTGGACCACTCATCCAACCAA
GGATTGGAATCAAACTAGCAAGCTAAAGTCTAAAGGGTAGCCTCTGATCAGGATCAGATTCTTCACCAGCTAATTGAAGCAGAAATGCTGAATGCTAGAT
TGCTTGCTGCTGTAAAGCGCACTGAACTGAACTAAATGAATTACAGTGTGAAAGAAGATACAGTAGAAGTAGCAGATTACTGCTCTGTTTTAGCAGATTA
GCTCATGGCAAGATGTTTAGATAATGGAATAGATATCCAGTTTGATTGCCAGATGCAAGTCGATCTCTTTGCCCAGAAATTGAGCATGAACATGCACAGT
GCATGATGCACTCACTCTCATTCATCAGTCATCACCTACATGAATGTAATTTGTTTACAGGTGGTTCTTGATAACTACTAATTAAAGTATTGGTGTAAGC
ATCTAATGTATTCAGACTGCATGCCTATATTCTTAGGGATCACATGAATAAAAAATCATTGAGGTAGCAAATGTTTGTGTTCAAGAATAGGAAAAGGTAG
TAAGAAGAAGGTGGGAGAATGACACTTATCTTTCTAGTCAATGGGATCTTTGAACGCAGTGGCACACAACCCTCTGTAGCTTGCAATTCATATCTGCAAC
AGAGCAACTGCAAGCTTGCATCCTTCTCTTTTCATCAGAAACTTACAGGTCCAAATGAATATGCAATGAAACAAGTTCAGAATATCTAGTCTCTACATAT
GTGGCGTGGCAAGAAAGCTCTGCTACATAAATTGATTTACTTTCTGTAGGACAGGGGAATAATAGACTTAAGTACACATGCCAAGAATTACCATTGCTGA
GGAGTTGCAACTGTACTTAGATCTAAGTATCATCATACACAAGTAAATGCATCCAGAACTTGCATATCGAGGGTACAGTGCTACCGGATGAATCGCAGGA
TCAACCATCATTCAACAGAGACAGATAGAGATTAAAGCTTACTGTTGTGGCTCGATGATGGCGGATGAGTGCTCGACCCATCGGTGCTCCAGGGGAAACC
ACTTGAGCACCCTCCTGCCCCGCGGCTCGCCGCGACGCCGCCGCTGAGTCGCCGACGCGGCAGGGGACTGCGACGCGGACGCACTACCTCCGGACCTCCC
TGTTGCCCCAGAAGAGTAGGCCCGACCTCGCCTCCTCCAGCCGTCGATGAAGGGTAGGCCGGTGATGCGGCTGCTGCGGCGTGGATCGGGGATGCGGCTG
CGGCGTTGAGGAGGTGGGGAGGGTCGCCGCCGCCGGCCGTCGCCGTGCCCGCCGCCCGACGAGCTCCTCCGTAGGGCGGCTGATCCGGCCCTCCCGAGGG
CGGCGCCGCCGGATTCGCCGCCGCAGGCCGTCGCCGAGCCCGCCGCCCGCCGTCGTCGTCGTCGCCGTGCACGCCGCCGTCGGGGAAGGGAGGCCGCCGC
CGCGCATGGGAGGTCGGGGAACGAAGGCCGTCGCCGGTGCCGAGCGGGTCGCCGCCGAGCCCGCCACGCCGCGCAGCTCCCGTCGGTGAGAGAGAGAGAG
GAGAGGAGGAAAGAGTGAGAGGCTGAGAGGAGAGGAGAGGATAGGATAAGGTCGGTGGAAGTTAAAAT