CANTATAdb - search

Detailed information on CNT30604665

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007073, E-value = 2e-47

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30574676	Oryza punctata	Oryza barthii	30.53	34.45	85.67	349	forward

Expression of CNT30604665

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKQVHPWSLTASSYQTSHPSTKSILTPSF*

>peptide 2 (72 aa)
ERSRIEKKQRRSRKGKKRERKKKREEREKKKEGSGTHCGTHSLIFSLCGPHLTGKNLTRSKMHLYILLGCSV*

>peptide 3 (53 aa)
KKQNRKEAEKKQEREEERKEEEERRKRKEKGRKWDPLWDPLPYFLSLRAPLDW*

>peptide 4 (32 aa)
MLVQSPLRTDSFGITSKHITSATTRVKWDTPG*

Sequence

>CNT30604665
GAAAGAAGCAGAATAGAAAAGAAGCAGAGAAGAAGCAGGAAAGGGAAGAAGAGAGAAAGGAAGAAGAAGAGAGAAGAAAGAGAAAAGAAAAAGGAAGGAA
GTGGGACCCACTGTGGGACCCACTCCCTTATTTTCTCTCTCTGCGGGCCCCACTTGACTGGTAAAAATCTCACAAGGTCCAAAATGCATCTCTATATTTT
ATTGGGCTGTTCGGTTTGATAGACCCCGAGAGTCCATATTTTACTCCCTCCCTGCAAGTCAATTGCCCATAAACCAAAGTCTGTCTTACTCCCTCTGTAC
CAACAACCCTAAAACCCAAAGTCAGTTTTATCCCTCACATCAAGCTAGCCACCCATGAAGCAAGTCCATCCTTGGTCCCTCACTGCTTCCTCCTACCAAA
CCAGCCACCCCTCAACCAAGTCTATATTGACTCCCTCCTTCTAAGGCAGTCACCCATAACCAGAAGTCCATACACCCTCCCTCACCTTTTGCTGGCCCCA
CATGTCTGTTTTTGATTGTTGCGCCTAGTTGTGGTTACCGGATTTTCTTCGATCGTGGATTTCTCGAAGATTCGTGAAGATTAAGACCTTAAGCAAGGCA
AGCCACCTTTGTTCATCTTGAGCCTATATTTGGATTTAATTATATTGTTTCTAAAATATTTATGCATTGATAGGATTCCACTTGAACTGGTTGCCCCGTC
TGCAAGGCAGATCGGTGGGCCTACCTAACTTGCTGCATTTAATCATTTCCTTTGTTAATTGCTTCATCATGTTTCCCTTGTAACCACCTTCACTGCGCCT
CGATATTCGTGCACTCTGTACGAGTATCGCTGTCGCCTTCAAACCTAAAATATGAGAACATCTTGGGTAAAACTTGATTTACAAAAGTATTGAAAAACCC
GACGCCTGAGTCGGTGCCTTGTGAAAGAAAAATGAGTTTTAAAAATAAAACTCGCGACACAAGGCATTCCTGGGCGGGATGCTTGTGCAGTCGCCTTTAA
GGACTGATTCCTTTGGAATTACATCCAAGCATATAACAAGTGCGACCACACGGGTGAAGTGGGACACCCCTGGCTGAGTAATTAGCTAGGCCAAGGAAGT
CTTGATGCCAAGGGACAAGTGGATTCGCCGGGGTGGTGTCGGG