« Back to Oryza punctata search


Detailed information on CNT30604243


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004664, E-value = 3e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554388Oryza punctataOryza glaberrima25.4738.292.65136forward
CNT30100437Oryza punctataOryza rufipogon25.285.4294.07135reverse complement

Expression of CNT30604243

Peptides detected in this lncRNA

>peptide 1 (58 aa)
LSRLADGRRRPRRLRNPPPAQLFRLPHFAPLPPTPRLATLSPGASPPGFIPFLCSSLW*

Sequence

>CNT30604243
GCTTTCTAGGCTAGCGGATGGAAGAAGACGACCGCGGCGGCTGAGGAATCCTCCGCCAGCTCAGCTTTTCCGGCTTCCGCATTTCGCTCCACTTCCGCCG
ACGCCGCGGTTGGCTACCCTCTCCCCTGGGGCCTCGCCACCCGGATTTATCCCCTTTCTCTGCAGCTCGCTATGGTGAACTGCGAACAGGGACAACGGTG
CTGCCACTAGGCCATGGTCGACGGCGCGGAGTGCGGCGAGGCATCACCAAAAAGATCCACACTTCTATTGGGATCAAATTTGTAAATCTTGATTAATGCA
GGGCCGGTTGTCCAGGTCATGCCTTTATGTGTTCATGCTTTGCAGTTCACGAAAACGGCCTAGTTTTTTTTCATAGAGATTAGACGATGAAGGAATAAGG
GGGTGTTTACATGGGGCTAAAACTTTTTAGCTCATGTCACATCGGATGTTTGGAAACTAATTTGAAGTATTAAACATAGACTAATAAAAAAACTAATTTC
ATAAATGAGAGCTAATCTGCGAGACAAATTTTTT