Detailed information on CNT30604122


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693610Oryza punctataOryza sativa23.5825.8997.17212forward
CNT30286652Oryza punctataTriticum aestivum20.1328.3386.74181forward
CNT30222247Oryza punctataHordeum vulgare12.2426.4483.64110forward
CNT30660555Oryza punctataTriticum dicoccoides19.9146.9883.24179forward
CNT30596213Oryza punctataOryza meridionalis34.4818.4283.23310forward
CNT30116769Oryza punctataOryza nivara23.5817.3997.17212forward

Expression of CNT30604122

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHIQPSITSIPTTKNGTFMYRHLNQFRVSDRNQCFFFINMHHLDQFRVPD*

>peptide 2 (60 aa)
MDGWIDICMCGASGVAWLHHKRERGEMNQSRREERERSGRWMDEREARRHAVQVTRHRANL

>peptide 3 (53 aa)
MHHATPHVCYACIYNHRSHRSPQLKMELLCIGILTNSEFQIEINVFFLSICII*

>peptide 4 (52 aa)
MWVLQKFLISLSVRPGRLRAMRDQRLPHWEWRWRMRRSSSAVMRPRLRPGWR*

>peptide 5 (35 aa)
MKKLNAMRGWMDGSIYACVVRPVLHGCIIREREEK*

>peptide 6 (38 aa)
VVVAVVAVAAEQDEVSEDEDKDDPEEVTGGGVFFFLAS*

Sequence

>CNT30604122
TGGTGGTCGTCGCCGTGGTGGCTGTCGCGGCGGAGCAGGATGAGGTGAGCGAGGACGAGGACAAGGATGATCCGGAGGAGGTGACCGGCGGTGGCGTATT
CTTCTTCTTGGCGTCGTGAGCCATCTTGCGCATGTGGGTTCTCCAGAAGTTCTTGATCTCGTTGTCGGTGCGGCCGGGGAGGCTGCGGGCGATGCGAGAC
CAGCGGCTGCCCCACTGGGAGTGGAGGTGGAGGATGAGGCGCTCCTCGTCGGCGGTGATGCGGCCGCGCTTGAGGCCAGGGTGGAGGTAGTTCACCCACC
GGAGACGGCAGAGAGGAAGAAGAAGATGGTTAACCTCAGTTAATTCCCGTGCGTTCTAGCTCATGCATAATGCATGCCTCCATGCATCTCCTAGCTAATA
CCATCGATCGACCGCCTCTAATCTAATTAATTCCATGCATCATGCAACACCGCACGTGTGTTACGCATGCATATACAACCATCGATCACATCGATCCCCA
CAACTAAAAATGGAACTTTTATGTATAGGCATCTTAACCAATTCAGAGTTTCAGATAGAAATCAATGTTTTTTTTTTATCAATATGCATCATCTAGATCA
ATTCAGAGTTCCAGATTAAAGAAAAATCAATTATCGTGTTCATGCATCTAAATCAATTCAGAGTTTCAGATTAGCTGTTGCCAAATTGGTATGAAGAAAT
TAAATGCGATGAGGGGATGGATGGATGGATCGATATATGCATGTGTGGTGCGTCCGGTGTTGCATGGTTGCATCATAAGAGAGAGAGAGGAGAAATGAAT
CAATCAAGAAGAGAAGAAAGAGAAAGAAGCGGTCGATGGATGGATGAGAGAGAAGCTAGGAGGCATGCAGTGCAGGTCACCCGCCACCGCGCAAACCTG