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Detailed information on CNT30604087


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178462Oryza punctataSecale cereale11.931.8384.8599forward
CNT30576324Oryza punctataOryza barthii24.1619.5196.52201forward
CNT30116799Oryza punctataOryza nivara24.1625.0396.52201forward

Expression of CNT30604087

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEGNLEFQKATLNGIRKRISNKMYGLHLVH*

>peptide 2 (63 aa)
MLGDLNKDLVLLLKEKHSLGDESQNLKMKINAIESSSRDYIADILEELNMENSGLISTVHSVI*

>peptide 3 (40 aa)
MTFFLHFLVKWETFSVPSKCCNRVHVLNHYHGQLRVLKLI*

Sequence

>CNT30604087
ATCAATATTGTGGTATAAGTTCTCTATGCAACACCTAATCATTTTTAGCTTTTCAAACAGCTTCTGAAACAGACTCACTTAAAGTGATGGAAGGCAATTT
GGAGTTCCAGAAAGCTACCCTGAATGGAATTAGGAAAAGAATTTCTAATAAAATGTATGGTCTACATTTGGTCCATTGATGAGATCAAATAGCTTTCAGC
GTTCTGACTTATATTGAAACTTTACAGCCCTAGTTTTGTATCAGATAATATGACGTTTTTCTTGCATTTTCTTGTTAAATGGGAAACCTTCTCTGTTCCT
TCAAAGTGCTGCAATAGAGTTCATGTACTAAACCACTATCATGGACAGCTCCGTGTACTGAAACTGATTTAACCACTGTCATTATTCCAAATTATTCATG
ACTTGGAGATCACCAGATTCATTAAAATGATTAGATAGTAGGATTGGAAATATTTATTCTCTGCTTCTTTTACTTCCAAAAAGAGCTACAGGAAATAAGT
TAATATTGTATCAGATTGTTTACATTCTATTTATCAGGGAAACGTTCATCAACGAATCTAAGGGGTTCCAGGCTAACATGCTTGGAGATTTGAACAAGGA
TTTAGTTCTTTTACTTAAGGAGAAACATTCACTAGGGGATGAGAGTCAGAACTTGAAAATGAAGATCAACGCAATAGAAAGTTCGTCACGTGATTACATT
GCTGACATTCTTGAGGAGCTAAATATGGAAAATTCAGGGCTTATTTCCACAGTGCACTCCGTCATCTGAATATTTAAACATTGTACATAAGAATTGATCT
CTTTATGCTGAGTTATATCATTTGTCTTGCCA