Detailed information on CNT30604069


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30576256Oryza punctataOryza barthii39.5530.5486.92390forward

Expression of CNT30604069

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MRVVMGWFSSEANFFNEIQKHFEGMRAVRLTICVLSVHFHRLLSLGIEPLLTVYQQVLYTNYLQGCLV

>peptide 2 (47 aa)
QIYRRLPPSRRSSSSRRLLREPPLGSRQSRSRPPWHLPPFRLPQELR*

>peptide 3 (40 aa)
ANLSSPPPLAAVVVFASSPPRAPARIAPIAVSSSMASAPL*

>peptide 4 (34 aa)
MIFLQVVQLLSQACCLPLPELLDMKTESINAVSR*

>peptide 5 (46 aa)
RKSIVASPPRGGRRLRVVSSESPRSDRANRGLVLHGICPPLDCRRS*

Sequence

>CNT30604069
CGCAAATCTATCGTCGCCTCCCCCCCTCGCGGCGGTCGTCGTCTTCGCGTCGTCTCCTCCGAGAGCCCCCGCTCGGATCGCGCCAATCGCGGTCTCGTCC
TCCATGGCATCTGCCCCCCTTTAGATTGCCGCAGGAGCTAAGGTAGCTTTGCTGCCGCTCGTCGCATCCGTGCATGACCACTCCTCTCGAATCGTGGTGC
CCACCGATTCGCTTCTCTCACTGCCGCTCCTGTAGCCCCAGCCCCATCTGCTTGCGTTGATTTTGATTCTGTGCCGCTTAGCGACCCGCCTCTCTTCATC
TAGGGTTCAACCTCCGAGCCGGCTTCTCAGTTGCTGCAAGTGGAGGCGGCAAGCTAGGGACAGCAACTGCATATCTTGCAAGAAAATCGGTTTTCTGGCC
ATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAGAACTATTGGATATGAAAACAGAGTCAATAAATGCCG
TATCCAGATAAGACGATGAGCTACCAGCTTTATTGAATTTGGTACTCCATTATCGGTCCTTTTTGTTTTGCGGGGTGTTACTCCCGTATTGTAAAAAGCT
TATTTGTCTAAGCAAAATGCTCTCAAGTTCCACCAAGCTAGATTAACCATAAAGTATCTGCAGAGTGCACAAGTCAGATCTGTCAGCTGTTACCGAAGCA
AAAGGTTCAATGTGAACAGAAAGGATACAGTACTGATCCTTTTTAGAGGATTTAACACAGATTGACAGCAAGGGTGCTCTGTATGCGAGTCGTGATGGGA
TGGTTCTCTTCAGAAGCAAATTTTTTTAACGAAATTCAGAAGCATTTCGAAGGCATGAGGGCTGTTCGGTTGACAATTTGTGTATTATCTGTACATTTCC
ACCGTTTACTCAGCTTAGGAATTGAACCATTGTTAACTGTGTACCAGCAGGTTCTGTATACGAATTATCTTCAAGGGTGTTTAGTG