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Detailed information on CNT30603630


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105132Oryza punctataOryza longistaminata16.2145.389.37207reverse complement
CNT30104408Oryza punctataOryza rufipogon8.321.77100106forward

Expression of CNT30603630

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIRRRMHEEHQDRGSYLYLSFEKSHLIRAK*

>peptide 2 (30 aa)
MPCTGLSNRPESCYVFALLGCSLCMQYPID*

>peptide 3 (50 aa)
MVWLFDLLRAMALLCIGRTKPIANNKLFPAPSTLINSHPAKPQLPGRREL*

>peptide 4 (41 aa)
MTSLSDLAGGFIRRGVIDPVDELTQRVGPTCQCDSECSRTRE

>peptide 5 (31 aa)
MIYAMHRAEQQTGELLRFCSSWLFSLHAVSY*

Sequence

>CNT30603630
ATAAAACTGAACCTGTCACATGTTTGGTTTCTGACTAGCTAGTTTTCTAACACAGCACTGGTTTCACGGTCGTGTTCGTGTTAAAATATGCTAAGCTTAG
CTATCTGCGCCCTCGAATCCACCAGGCCGGTCAACGTTCCTAATTAAATCTGCAAGTGAAGAGACATATCCTAGCTAGCTGCCTCGATCTGGGTCGTAGC
TCCGGCCGGCCGCCGGCGTCCCATGGCTTCGCCGCCGCCGTCGCCACCGCCGGCGGTGGCGGTGGCGGCACTATGATCTATGCCATGCACAGGGCTGAGC
AACAGACCGGAGAGCTGCTACGTTTTTGCTCTTCTTGGTTGTTCTCTCTGCATGCAGTATCCTATTGATTAGGCTAAGACGGAGATCAGGTGCAGAGACA
GCATGATCGATCTTGCGTAGCTACTGTAGATAGCTCGAATGATACGACGACGGATGCATGAAGAACATCAGGATCGAGGAAGCTACCTTTATTTGAGCTT
CGAAAAAAGTCACTTGATTAGAGCCAAGTGAATGGTCCAAGTACTTGCTAAATTCAGTACCCCCTGCATGCCTTAATTCTGTGGATCTCGCTCGATCAGC
GTCGGTCTCGTCATCTCGTCACAACATGGGAATGATTGGTGAGTGGTTAATTAGTTTAATTAGTTAATACACTCTCCCTTTTGCTCTCTCTTTTCGCTGC
TTTTGCAATTTGTTTTTTTTTTCTGGATGGTTTGGTTGTTTGATCTCCTGCGAGCTATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCGAATAA
CAAACTCTTTCCTGCTCCCTCGACCCTAATTAACTCCCATCCTGCCAAGCCTCAGCTGCCAGGGCGGCGTGAACTCTGATTCGATCCGGGTATTCAATCC
CGCCAAATCAAGCAAGAAAACGGATGCGCGTGCTAACGCTTTCGTGAGACGTGTGTTAGATGTTGTTTCTTTAGACTTGTGACTCTCATTTGATTTTCTT
TCCGGTCCGGGCCCATCCTAATAGAGAGGGTAGATATGAAAGCCGGAATAAGTCCATTTGTCTCCCTCATCTCTTGCCCTTGTGTGAATAACATCCCCCA
ACCGGAAACCCGGGTATAACGCCTCCTTCATCTATTAAAACCAGAGCAAATGACCTCCCTCAGCGATTTGGCAGGCGGTTTCATCCGACGTGGCGTCATT
GACCCGGTTGACGAGTTGACTCAGCGTGTGGGACCCACATGTCAGTGTGACTCGGAGTGTTCCCGCACCCGCGAGAA