« Back to Arabidopsis lyrata search


Detailed information on CNT3060118


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SSM4|CHM1B_ARATH, E-value = 2e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Arabidopsis lyrataSetaria viridis38.4449.7887.61113forward
CNT30513024Arabidopsis lyrataJuglans regia20.418.0586.6760forward
CNT30371693Arabidopsis lyrataArabidopsis thaliana72.1139.0497.17212forward
CNT30306600Arabidopsis lyrataTriticum aestivum35.3732.8184.62104forward
CNT30384863Arabidopsis lyrataTriticum turgidum35.3710.2282.69104reverse complement
CNT3085000Arabidopsis lyrataVigna radiata57.826.0583.53170forward
CNT30554195Arabidopsis lyrataOryza glaberrima38.443.7189.38113forward
CNT30254428Arabidopsis lyrataAvena sativa38.4421.0484.07113forward
CNT30669382Arabidopsis lyrataTriticum dicoccoides40.4819.9785.71119forward
CNT30141866Arabidopsis lyrataLolium perenne38.4418.5983.19113forward
CNT30347540Arabidopsis lyrataEragrostis tef40.4810.0686.55119forward
CNT30368840Arabidopsis lyrataSorghum bicolor32.6526.7488.5496forward
CNT30370517Arabidopsis lyrataOryza glumipatula35.7121.0490.48105forward
CNT30571602Arabidopsis lyrataVitis vinifera44.5611.8884.73131forward
CNT30705067Arabidopsis lyrataPrunus avium79.592480.77234forward
CNT30116955Arabidopsis lyrataOryza nivara38.4414.3289.38113forward
CNT30111719Arabidopsis lyrataFicus carica62.9320.4684.86185forward

Expression of CNT3060118

Peptides detected in this lncRNA

>peptide 1 (79 aa)
RLKGLDDIGHGFGDGGHLSLSIKTSNNSVQARSETEVVHLLATLTNGVLSVDPSTIHVPLLDRLLHLQFLCFLFLLTLP*

>peptide 2 (38 aa)
MFPFSIAFFTFNFSAFSSFSHFLDCLCRDLDVNFKSNI*

Sequence

>CNT3060118
GAAGACTCAAGGGACTTGACGATATTGGTCATGGATTTGGTGATGGTGGTCATCTTAGCCTGAGTATCAAGACGAGCAACAACAGCGTCCAGGCGAGAAG
CGAGACGGAGGTAGTTCATCTGCTCGCTACGCTTACGAATGGCGTTCTCAGCGTAGATCCGAGCACCATCCATGTTCCCCTTCTCGATCGCCTTCTTCAC
CTTCAATTTCTCTGCTTTCTCTTCCTTCTCACACTTCCTTGATTGCCTTTGCAGAGACTTGGACGTGAATTTCAAATCGAATATCTGATTCATC