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Detailed information on CNT30600476


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543691Fraxinus excelsiorBrassica napus826.8881.98111forward
CNT30144056Fraxinus excelsiorMedicago truncatula6.9926.2985.5797forward
CNT30261195Fraxinus excelsiorBrassica rapa3.3921.9691.4947reverse complement
CNT30607409Fraxinus excelsiorGossypium raimondii9.6527.8681.34134forward
CNT3031357Fraxinus excelsiorTheobroma cacao9.6547.3583.58134forward
CNT3036761Fraxinus excelsiorCucumis melo6.6333.9582.6192forward

Expression of CNT30600476

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MNPGLGPFGCLLLLITSPLALASPLSLSLVLILCRNSSWHLDGCTCSTRTWILFQ

Sequence

>CNT30600476
TATATTGCAAGTAAATTGAAGTATACCTGCAAAGTTTTTCAACAACTTGACCATCAATAGTTGTTTTTGCTTTTAAAACTGCACCTCAATGCTTATCTGA
GCTGTCAGTTTCTATTATCATCTTATCACAGTTTTTCTGGATCTCACAAGTTGTTTAGCTAGTGCCTGAGAGGAGTATAAGAAAAGTCAATATTGCAATC
AACAAATAGGATTTATTTGTCATACTATTGCAGCTATCAAGAGGTAATAAGTGGTTTTTCTAGAAGGTTTCTACAATATACACCATTGGCAAAGCTCAAG
TTATAATTTAAGCTGGAAAACATACTTATTGTCACACATTTCATAGGAATCACAAATTACAATCGCTTTGATTTTAAGTTAAACACTCCCAAGCATGTTC
TCCAAGTATTTAAACCTAATAGAGAGTTGGAGTAAAAATTATACCCTAATACAGTAATTCAATGACTTCAGCATGTATTTTTTCCAAACAAGATAATATG
TTACAAGAACCGGGTTAAGGGTATTACATAAATAAATCGAATCAGCAAAATAATAACGAATATAAGAAGAGTTCGATAAAGAGAAAATCTAGTGACTTGT
GCAATTGAATGCAAATATAGTATTTTCGCAAAATCCAAATTAGATAAAAGCTTCAGAGACACAAAAATCAACCACGGAAATGGTGGTTAAACTGTCATAG
TTGCTATTGAGGGTGAATGTCCTTTACTCAAAAATAAAGCCGCAACATTTTTAGCCAAAAAAAAAAAAAAGGAAGCTAAAATTCTTGAATAAATACCTTA
ATTTTACAAACCAACCGGTCCAAACCAAGAAAAGGCAGTGATGGGTACCAATTGATCAAACAGTTCACATTAACCAGCAGTAGTAATACAGACAGCCAAA
ATAAAACAAATGCATTAATTATACTGAAACACAATCTTTGCAAAGAAGCACATCCCAATATTCAATTAAACAATTAAAATTCATTCATGCAAAATTTCAC
CTCAACAGAATCCTGTACTTGTATTGTAGAACAAAATCTCAATAAAGTGCATTTTTAAGTCCAGGATACAAAATTAGAAAAATGAAGTCTTGAACAGTTC
AGATCACAATGAGCAGACAAGGACAACAATAAATGACAAACTAATTTAATAACCTCCCTTGAGATCGTTGACCACATCATATGGCATAGGAGTAACAGTC
TCCAAAGTTGCACCTCCAACCATGAATCCAGGTTTGGGTCCCTTTGGCTGCCTCTTGCTACTAATCACTTCACCTCTTGCCTTAGCCTCACCCTTAAGTT
TGTCGTTAGTCTTGATCCTTTGCAGAAACTCCTCATGGCACCTCGATGGCTGCACGTGCTCAACTCGTACATGGATCCTCTTTCAAAT