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Detailed information on CNT3059952


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639490Arabidopsis lyrataNymphaea colorata27.0813.6884.6291forward
CNT30316651Arabidopsis lyrataCorylus avellana37.225.4185.6125forward
CNT30703860Arabidopsis lyrataQuercus lobata33.3341.3383.93112forward
CNT30501551Arabidopsis lyrataCoffea canephora25.619.1184.8886forward
CNT3070513Arabidopsis lyrataQuercus suber33.3316.4584.82112forward
CNT3096605Arabidopsis lyrataSolanum tuberosum24.119.6887.6581forward
CNT3076889Arabidopsis lyrataBrassica juncea92.5671.6689.39311forward
CNT30479817Arabidopsis lyrataArabidopsis halleri96.7388.3295.08325forward
CNT30152051Arabidopsis lyrataPrunus persica32.7414.0181.82110forward
CNT30120862Arabidopsis lyrataCitrus clementina20.2412.588.2468forward

Expression of CNT3059952

Peptides detected in this lncRNA

>peptide 1 (78 aa)
KTLRQFYTAFQEDNGGVSEFLKVGTVAMYLSPFTDSGWAMVSSSDISSGVSFTDKAPMFWLRFSILVVPGMGQTSSPW*

>peptide 2 (52 aa)
NSETVLHSIPRRQRWSVRVFEGWHCCHVSFSFHRLWLGNGLELRHLFRSEFH*

>peptide 3 (29 aa)
MQGLVVRECTLSSPTLQKLSQRESCCELSF

Sequence

>CNT3059952
AAAACTCTGAGACAGTTTTACACAGCATTCCAAGAAGACAACGGTGGAGTGTCAGAGTTTTTGAAGGTTGGCACTGTTGCCATGTATCTTTCTCCTTTCA
CAGACTCTGGTTGGGCAATGGTCTCGAGCTCAGACATCTCTTCAGGAGTGAGTTTCACTGATAAAGCTCCAATGTTCTGGTTGAGGTTTTCAATCTTAGT
GGTTCCTGGGATGGGGCAAACATCATCTCCCTGGTGATGAACCCATGCAAGGGCTAGTTGTGCGGGAGTGCACCCTTTCTTCTCCGACATTGCAGAAACT
TTCTCAAAGAGAATCTTGTTGTGAACTAAGTTTTCC