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Detailed information on CNT30597299


BLAST search results

BLAST vs Swiss-Prot:
sp|O22582|H2B_GOSHI, E-value = 6e-58

BLAST vs NONCODE:
NONMEST003205, E-value = 6e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Fraxinus excelsiorOryza sativa36.0731.2880.81198forward
CNT30675682Fraxinus excelsiorSetaria viridis36.0743.7182.32198forward
CNT30523103Fraxinus excelsiorSetaria italica35.8829.1480.2197forward
CNT30315505Fraxinus excelsiorCorylus avellana46.8156.2482.1257forward
CNT30518203Fraxinus excelsiorJuglans regia65.7640.5283.66361forward
CNT30702570Fraxinus excelsiorQuercus lobata42.9947.284.75236forward
CNT30618877Fraxinus excelsiorSesamum indicum75.7752.8685.82416forward
CNT3072234Fraxinus excelsiorQuercus suber35.8831.2782.23197forward
CNT30379403Fraxinus excelsiorManihot esculenta67.465.8483.24370forward
CNT30526608Fraxinus excelsiorPhaseolus vulgaris49.9133.8781.39274forward
CNT30630598Fraxinus excelsiorVigna unguiculata36.4335.9184.5200forward
CNT30200086Fraxinus excelsiorPisum sativum68.4970.5480.05376forward
CNT30163367Fraxinus excelsiorPistacia vera70.3146.3481.09386forward
CNT3094085Fraxinus excelsiorSolanum tuberosum54.6459.4183.33300forward
CNT30180643Fraxinus excelsiorSecale cereale22.7715.1183.2125forward
CNT30220711Fraxinus excelsiorHordeum vulgare35.8819.0281.22197forward
CNT30383318Fraxinus excelsiorTriticum turgidum36.0721.5580.81198forward
CNT30565715Fraxinus excelsiorActinidia chinensis55.9239.1185.99307forward
CNT30586986Fraxinus excelsiorMusa acuminata48.4575.1479.7266forward
CNT3086649Fraxinus excelsiorVigna radiata36.4326.8185200forward
CNT30510004Fraxinus excelsiorSolanum lycopersicum22.0439.6786.78121forward
CNT30553165Fraxinus excelsiorOryza glaberrima20.2224.1385.59111forward
CNT30171046Fraxinus excelsiorTrifolium pratense52.2880.8585.37287forward
CNT30240926Fraxinus excelsiorAvena sativa32.626.1781.01179forward
CNT30656091Fraxinus excelsiorTriticum dicoccoides36.0722.680.3198forward
CNT30457276Fraxinus excelsiorSaccharum spontaneum33.717.3581.08185forward
CNT30130711Fraxinus excelsiorLolium perenne35.5228.6881.54195forward
CNT303693Fraxinus excelsiorZea mays20.0431.8883.64110forward
CNT30606042Fraxinus excelsiorGossypium raimondii36.4365.5787.5200forward
CNT30231835Fraxinus excelsiorAnanas comosus23.3219.6983.59128forward
CNT30205622Fraxinus excelsiorHelianthus annuus35.8872.9685.79197forward
CNT30129800Fraxinus excelsiorCorymbia citriodora40.827.8384.82224forward
CNT30684130Fraxinus excelsiorTriticum urartu35.8827.1781.22197forward
CNT30719869Fraxinus excelsiorTriticum spelta36.0734.6879.8198forward
CNT30346527Fraxinus excelsiorEragrostis tef32.0683.4179.55176forward
CNT30363575Fraxinus excelsiorSorghum bicolor33.720.0779.46185forward
CNT30596761Fraxinus excelsiorOryza meridionalis36.0725.0680.3198forward
CNT30360275Fraxinus excelsiorLactuca sativa46.8157.4984.82257forward
CNT30369169Fraxinus excelsiorOryza glumipatula36.6135.0882.09201forward
CNT30431330Fraxinus excelsiorPapaver somniferum35.3419.7883.51194forward
CNT30570929Fraxinus excelsiorVitis vinifera72.3159.1781.36397forward
CNT3057074Fraxinus excelsiorAmborella trichopoda27.1425.7887.25149forward
CNT3024557Fraxinus excelsiorPopulus trichocarpa56.6560.0483.28311forward
CNT30327286Fraxinus excelsiorAsparagus officinalis35.5221.5783.08195forward
CNT30101075Fraxinus excelsiorOryza rufipogon20.2215.8385.59111forward
CNT30496069Fraxinus excelsiorDigitaria exilis36.0724.8179.29198forward
CNT30174435Fraxinus excelsiorVigna angularis41.8934.3382.61230forward
CNT3065708Fraxinus excelsiorSelaginella moellendorffii20.432.2884.82112forward
CNT30114697Fraxinus excelsiorEutrema salsugineum69.9562.6482.03384forward

Expression of CNT30597299

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MDLFQHLEDIDLVGLNALLHPLLLLVSRRCTAFFRQLLSGFRLFLCRSLLGGGFLLSWLFLCLRGHLS*

Sequence

>CNT30597299
CCTTCTCTACAACACTAAAGTAAGCGCAAACTAAACCAATAAAACCTAATTTCTAAACTGTGACAAGAAACCGAAAAATTCATTCAAGAGCTAGTGAATT
TAGTCACCGCCTTAGTCCCTTCAGAAACAGCGTGCTTAGCCAACTCTCCGGGCAAAACCAATCTCACAGCAGTCTGGATCTCTCGAGAAGTGATGGTGGG
CTTCTTGTTATACCTGGCGAGCCTGGAAGCCTCCTGAGCCAATTTCTCAAAAATATCATTGATGAAGCTGTTCATGATCCCCATAGCCTTGCTGGAAATT
CCGATATCAGGATGGACCTGTTTCAGCACCTTGAAGATATAGATCTTGTAGGTCTCAACGCTCTTCTTCACCCGCTTCTTCTTCTTGTCTCCCGCCGCTG
CACCGCCTTCTTTCGGCAACTTCTTTCCGGCTTTCGGCTTTTTCTCTGCCGGAGCCTTCTCGGCGGCGGGTTTCTTCTCAGCTGGCTTTTTCTCTGCCTT
CGGGGCCATCTTTCGTGAAAAATTAGTTATGAAATGAAGCTGTTTCCAC