Detailed information on CNT30597235


BLAST search results

BLAST vs Swiss-Prot:
sp|P20698|PRO28_ORYSJ, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104338Oryza meridionalisOryza rufipogon47.08100.2294.77459forward

Expression of CNT30597235

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKLRRGAACSNSKESKEENDXXXXXXXXXXXXXX*

>peptide 2 (42 aa)
MIINFNNVLGFILTEALCLNLHDIFIQICIASIFQLVTHDDV*

>peptide 3 (52 aa)
MIXXXXXXXXXXXXXDEGGLHCACLFIDAMDGFSLNSLSVALECLFLLDILLR

>peptide 4 (38 aa)
MTLFLSPVLLYCYNSVPDTTDGENATGSSVVAWVDTAY*

>peptide 5 (42 aa)
MTFSFRFVSPRFFNLSHTMMYDFISLSCTTILLQFSTRYHRR*

Sequence

>CNT30597235
GACCTGCTTAACACACTCCGTTCACGTCGAGTAGCCATAGTAGCTTAGAACCGAATGTAGGCACACATCATAAAGTTGTAAATGCAACCATAGTAGACGG
TGATGATAATTAATTTCAACAATGTACTAGGATTTATCCTTACAGAGGCATTATGTTTAAACTTGCATGACATTTTCATTCAGATTTGTATCGCCTCGAT
TTTTCAACTTGTCACACACGATGATGTATGACTTTATTTCTCTCTCCTGTACTACTATACTGCTACAATTCAGTACCAGATACCACCGACGGTGAGAATG
CTACAGGGAGCAGTGTTGTAGCTTGGGTAGATACCGCATATTAACGGCAAGTTTAGGGCCAACATAGCTTGGGCTAGAGCTTGAGTCTGATCGAAGTAGA
TGCCAGTAAACTGTTGTAGCTGCTGCACAATCACCTGAACACTGCTAATGGCCTGGCAGCGAGACTGTTGCGCGATCATCCTGAGCTGTTGGCAGCACTG
CTGCTGCATGACTTGGCAGTTTCTCAGTTGAAACACGGGTGATTGGAAGAAGGGGGTTGCCACTGTGCTGCACTGCTGCCTNTGGCAGCACTGCTGCTGC
ATGACTTGGCAGTTTCTCAGTTGAAACACGGGTGATTGGAAGAAGGGGGTTGCCACTGTGCTGCACTGCTGCCTCACGAACTCACCGCATGGGCTAAGCA
TCTGTTGCTGCAGCATGAGCTGCGGCTGCAGCTGCTATTGCCTGTAAACTTGAGTAACAGCATGAAACTGCGCAGAGGCGCTGCATGCAGCAATAGCAAG
GAGAGCAAAGAAGAAAATGATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGAAGGGGGTTTACATTGTGCTTGTCTATTTATAGAT
GCGATGGATGGGTTTTCTTTGAATTCCTTATCGGTTGCTCTAGAGTGTTTGTTTTTGTTGGATATTCTATTAAGA