Detailed information on CNT30596805


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553639Oryza meridionalisOryza glaberrima254.6289.898forward
CNT30369867Oryza meridionalisOryza glumipatula23.4714.7796.7492reverse complement
CNT30110453Oryza meridionalisOryza longistaminata24.235.1397.8995reverse complement
CNT30103544Oryza meridionalisOryza rufipogon23.476.198.9192reverse complement
CNT30578142Oryza meridionalisOryza barthii24.235.5390.5395forward
CNT30116170Oryza meridionalisOryza nivara24.493.8295.8396reverse complement

Expression of CNT30596805

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MRVAVSGGSYCTIPTLARKLLLLLLFNWKVETFVHQHGACNPLWLNAEVYAIMYLQTFFTLKLCRGQCSRI*

>peptide 2 (32 aa)
HIYVNESRHICVPRFINIYMNVGNARKSYNLK*

Sequence

>CNT30596805
CATATATATGTTAATGAATCTAGACATATATGTGTGCCTAGATTCATTAACATCTATATGAATGTGGGCAATGCTAGAAAGTCTTATAACCTGAAATAGA
TGTAGTAGCATTTTGTTTATGAGAGTTGCAGTGTCCGGCGGGTCATACTGCACAATACCAACTCTGGCCAGAAAATTGTTACTACTGCTGCTCTTTAACT
GGAAAGTCGAAACTTTTGTCCACCAGCATGGTGCTTGTAATCCGTTGTGGTTGAATGCTGAAGTTTATGCAATAATGTATCTTCAGACATTTTTCACCCT
AAAACTTTGTCGTGGACAGTGCTCCAGAATTTGACTCCACTTCTTTTTTTTTTTAAAAAAAGTAAAAAAACTGAAGTCAGTGTTAAGTCCAT