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Detailed information on CNT30596278


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553765Oryza meridionalisOryza glaberrima57.6655.0897.62715forward
CNT3067465Oryza meridionalisLeersia perrieri21.0516.3687.74261forward
CNT30105469Oryza meridionalisOryza longistaminata24.8428.4999.68308forward
CNT30101900Oryza meridionalisOryza rufipogon50.1648.2997.43622forward
CNT30576310Oryza meridionalisOryza barthii50.3230.697.28624forward
CNT30604085Oryza meridionalisOryza punctata26.1373.388.58324reverse complement

Expression of CNT30596278

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RFRMSPRRRSREKLTVRVCHDRLFCPVAGSGS*

>peptide 2 (36 aa)
MIDCFVQLLVVVASNLLSHVRVCFELLVGRAARRCG*

Sequence

>CNT30596278
TTCGTTTTCGTATGTCTCCTCGTCGTCGAAGCCGGGAGAAATTAACCGTGCGTGTTTGCCATGATCGATTGTTTTGTCCAGTTGCTGGTAGTGGTAGCTA
GCAATTTACTGAGCCATGTCAGAGTGTGTTTTGAACTTCTTGTTGGAAGAGCAGCGAGGCGCTGTGGATGAGGAGCGATTTTAATGATGAATCCATTATT
ATTGGCTTCGATTAAATCTACTCAAGTGTGGAAGTTAATGATGTCCTCTTAATCTGTGACGCACATCACCTGGAAGTCTGGAACAGCCTTTCCACATTCA
AATTTGGGACAATTTGCAACTTGAAAGTTCAGACTTCAGGCCACGAGAGAATTACTTACATAGAATCCGGCAGCAGTTTTTCGAGTTGAAAAATTGAACT
AGAAATTCCTGGAGAGGCCACCTTCTACGTGAGAGTGAGACACGGCGGCGGCAGCGAGGTCACCTACACCGTCCAATCGGATACGCGCGGTTCAGATGGG
AACAGTTGAGATTTTGGAGGGAATCAGGTTTATTATTGCTGGGAATAATCACATTTCATACTGATACAAAAGAATGGCGACAGCATAAGGCCGTGATACG
GTAACAACATTTACACTCATACAGGTACATCAGTTTGTGCATTTCTGCCCTGGGACGCTTCTATCCAAGGCGCGCACCAAATACCTCATCAATTTTCTTC
CGTATTGTTCACTTATTCTGCTTAGAGCAGAAGTTTTCTCAGGAAGTCTTCGGAGATGCTATTCTAAAACCATCATCTCCACAGTACTGAGGAGACATGA
AAATACCAGGTCTCCTCGACGGCTCTGAGTAATTTACATGAATTTTGTTTCTGCAGATTAAAACAACATAGCTCGATTAAGTGTTTGCTACAATTTCAGA
AACACTCTGGATGGTATTTCGATGTAGTTCTTGAAACCTACCTTATGATTCGATTGCTGCGACCCTTACTGGCTTCATTACTTTTACAATGTTCCTCATA
TGCTCAAACCCCATCAGTATCACTCCTATGACATAAAGAAAGCTTAGTTGCAGCTTGGCAAGTAAGTTATAGACTGCTATTGCGGCATTTCCCCCATCAT
CTGTTCGTATTGTGACGGAAACAGGTCTTGCAGAAATAAGAGCCCCGGTTTCTGATAAAGACGTAGCGTAAGAAGTGTGCCTTGGAACATAGCCTTCGAA
AGAGATTTCGGGGGTGTTTGGCCTTTTTAATCTCACCTGA