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Detailed information on CNT30596250


BLAST search results

BLAST vs Swiss-Prot:
sp|B9FJG3|RSLE1_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONORUT003941, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693776Oryza meridionalisOryza sativa8.9178.6100180reverse complement
CNT30452219Oryza meridionalisSaccharum spontaneum5534.0683.621111forward
CNT30346253Oryza meridionalisEragrostis tef25.6483.9585.71518forward
CNT30362965Oryza meridionalisSorghum bicolor55.9939.6683.021131forward
CNT30107897Oryza meridionalisOryza longistaminata59.2651.4297.491197forward
CNT30100657Oryza meridionalisOryza rufipogon71.6353.8194.891447forward
CNT30575560Oryza meridionalisOryza barthii71.8851.0794.561452forward
CNT30580242Oryza meridionalisEchinochloa crusgalli54.642.6583.591103forward
CNT30497727Oryza meridionalisDigitaria exilis20.499.0484.71412forward

Expression of CNT30596250

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MRVPVPAEKIELPLLTIDIGMAKISRAIFERVGYLRVLSFHQFRMSNSWMRGVRDSSRYCSSSDFVGWLVAISERYISKSTSPSPVEGAVA*

>peptide 2 (39 aa)
MNSIIHHLNIFRSFNTINFRVAELNELHLEARIHHNSNS*

>peptide 3 (58 aa)
MIIKGSTNIRHQLIHITQPAHTLHAMSGTTLMAYYRQSVHNNMKELTEFNTTNYTLGG*

>peptide 4 (31 aa)
MLLLHKKGGITASLCCIQLDQRRTRCLRGSW*

Sequence

>CNT30596250
TCATTTCATATATTCAACACATGTACTTAGAATTTGAAACAATTTAGGATTAAAAATACACCGTGCTAGGACGTACTTACAGTTAACGCCTGCTGCTGCG
GCTTCTTCACCTGTTGCCCGATGCTTTTGTCGACGGGCACGGCAAGCCGTCCGCAAACCACCACCGCATGCTACAAGCCTACAAAGGATGATAATTAAGG
GAAGTACGAACATAAGGCACCAACTGATACACATTACGCAGCCAGCGCACACACTACATGCAATGTCAGGTACAACTCTGATGGCATACTACAGACAAAG
CGTACATAACAACATGAAAGAGTTAACAGAGTTCAATACAACAAATTACACCCTAGGAGGATAAGCTCAGATCACAATCAGTTCATAATCCCTGCCTAAA
ATACGCATAAGATGCTGTTGCTTCACAAAAAGGGGGGAATCACGGCGAGCCTATGCTGCATCCAACTTGACCAGCGCCGTACTCGGTGCCTTCGGGGTAG
CTGGTAAATACTGAAGCCAGTCTTTGGCACAAACGAGCGCCTCCACAATTTCTGGACGCGATGAGCTTCTGTAGTCATCAAGCATGCGAGTTCCAGTTCC
AGCAGAGAAAATAGAGTTGCCGCTGCTCACCATCGACATCGGAATGGCCAAGATATCCCGGGCCATCTTTGAGAGAGTAGGGTACTTGAGAGTGTTGAGC
TTCCACCAGTTCAGAATGTCAAATTCCTGGATGCGCGGAGTGAGGGACTCATCCAGGTACTGTTCCAGTTCAGATTTTGTTGGCTGGCTTGTAGCTATCT
CAGAAAGGTACATATCGAAGTCCACAAGTCCATCGCCGGTTGAAGGAGCAGTTGCTTGAGTACTATTCTCGCTAGCAGGTGCATTATTACCTCCCCCTTG
CTCAACGTAAGCCGGCGTTAAGGGGAGGGGCTGTGCAACATACTCGTTGTAGAGCTCATGAACAGCATCATCCACCACCTTAACATATTTCGCAGCTTCA
ACACCATAAATTTTCGAGTAGCTGAACTCAACGAGCTTCATCTTGAAGCGCGGATCCATCACAACAGCAATAGCTAACACAAGGTTGCAATCTTTCCAGT
ACTTGTCAAATCTCTCGTGCATATCCTTGGCAATGCTGCTGAAAACAGGGTCTTCATGCCCTGTGGCATTTGACAGCTCGAGCTGAAGTTTCCATGCCTC
ATGGAAAAAGAGATTTGAAGTTGGATTTGCTGCAGCCATGATGCTATGTGCTGAGTCATACAATAGCTTCAAGTAATTGCAGGCAGCCTCAACTTTTTTC
CAGTCCTCAGCGGACGGTGCCTCGTTGTAGTTATCATCACTTGTCTCTAGAGTAGAAAAGGCCTGCTTATAATCCAAGGCAGCCAGCAGCATGAGATAGG
TAGTGTTCCACTGTGTCGTAACATCCAGACAAAGGGTCTTGGTACTTGGGATCTCTAGTTGCAGAGCAATCTCTGCAAACTTCTCCTCACAGCTAGGAGA
AGCTTTTATGAACTTAATGCTTTCGCGGATATTATAGATGACACCATGAATTGAAGCAATGACATCCTGAGCAACTGCATTCAGGATATGGGCATAACAC
CTTACAACAAANNNNNNNNACACCATGAATTGAAGCAATGACATCCTGAGCAACTGCATTCAGGATATGGGCATAACACCTTACAACAAATAGTTGGCCC
TTGAGCATGAGGTTGTTCTTGTTGGAGAGATAATCCCTCAGATTCGCACTGTATATATCATGTGATGAGCAATCATTGTCCANNNNNNNNNNNNNNNNNN
NNNNNNNNAGTTGGCCCTTGAGCATGAGGTTGTTCTTGTTGGAGAGATAATCCCTCAGATTCGCACTGTATATATCATGTGATGAGCAATCATTGTCCAA
TGTGATGGTGAATAGTTTGTCCTTCATATTCCAGTCTGAAAGGCTTGTACTAATAGCTTCACTAAGTGCATTCTCTGAATGAGGAGAAGACACCATCATG
AAGTTTAGCATTCTTCGATG