Detailed information on CNT30596169


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693126Oryza meridionalisOryza sativa46.1531.0197.44156forward
CNT30553363Oryza meridionalisOryza glaberrima94.6745.8597.5320forward
CNT3067393Oryza meridionalisLeersia perrieri61.8339.5183.25209forward
CNT30116584Oryza meridionalisOryza nivara10075.4595.86338forward
CNT30603956Oryza meridionalisOryza punctata98.8276.9691.32334forward

Expression of CNT30596169

Peptides detected in this lncRNA

>peptide 1 (84 aa)
VHHRQDHLQHSGLQEKMKIIVFLFVGMIFVCSCTCVLWNIESGRPPEDLHQKKMRNLLASTDRKDAPGDRIDHRCQRINYPNCK*

>peptide 2 (43 aa)
CASPPRPSSTFGIARENENNCVPLCWYDFCLFMHLCVMEYRIR*

Sequence

>CNT30596169
TTGTGCATCACCGCCAAGACCATCTTCAACATTCGGGATTGCAAGAGAAAATGAAAATAATTGTGTTCCTCTTTGTTGGTATGATTTTTGTCTGTTCATG
CACTTGTGTGTTATGGAATATAGAATCAGGTAGACCACCGGAGGATTTACACCAGAAGAAAATGAGGAATTTATTGGCCAGCACTGATAGAAAGGATGCT
CCTGGCGATAGAATAGATCATCGGTGCCAACGTATCAATTATCCAAATTGCAAGTGAATGAGCTATTGGTAAAGCAAAAGAGGTACCTTAAAGATACTGA
ATGTCAGTGTAAGAAATAAGATGTAATTAGCTAGGCAG