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Detailed information on CNT30596132


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1PDX5|SBT3B_ARATH, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692983Oryza meridionalisOryza sativa10089.6596.77433forward
CNT30553409Oryza meridionalisOryza glaberrima97.2367.3699.29421forward
CNT30108001Oryza meridionalisOryza longistaminata51.0455.3984.16221forward

Expression of CNT30596132

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MPTGGWRNALYTALAWPTLVTVRVATWNVLRLGMAMDGRFKSASDPFTVV

Sequence

>CNT30596132
TTATACCATATCAGTCGACATTGATCAACTAGCATTATTATATGTAGCTACTAGCATATCTCGATCACATTAATTAGGAGATCTTTGAGTAGATCTCTTC
AATCACAATGCGAACTGCAATGGGGATCCGAACCCAATGGTTACCACCATCGTGCCAAGCTAAGCTTCCAAACCTATAGTCTCCTTGAATTGGCCTCCTC
GTCACCTTAAAGGTCACCTTGAAGCTCTGCACCTTTCTATCCTTAGAGAACACCAACACTGGCGGCTCAACAGCCATCTCGATGCCGACGGGGGGTTGGA
GGAATGCCTTGTACACGGCATTGGCCTGGCCAACGTTAGTGACGGTGCGTGTCGCGACTTGGAATGTCTTGAGGTTGGGGATGGCGATGGACGGGAGGTT
CAAATCAGCAAGTGATCCTTTCACTGTGGTGCA