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Detailed information on CNT30595508


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000940, E-value = 2e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110813Oryza meridionalisOryza longistaminata44.5328.494.92236forward
CNT30103763Oryza meridionalisOryza rufipogon87.3614.1395.46463forward
CNT30577454Oryza meridionalisOryza barthii68.315.5895.58362reverse complement
CNT30116008Oryza meridionalisOryza nivara84.5338.4996.21448forward

Expression of CNT30595508

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVVMACHGWVAAILYYLNTNWLHLQKSSEMS*

>peptide 2 (50 aa)
MFTTVNIEYWTQCSMGTHFSCYIFTRAWLCHACFLVWRLCENGRLQRIAC*

Sequence

>CNT30595508
AATGGTTGTCATGGCTTGTCATGGCTGGGTAGCAGCAATCTTGTATTATCTTAATACTAACTGGTTGCACTTGCAAAAATCTTCAGAGATGAGCTAGCAA
GCACTATCATGTAGCTGGGTAATAGCGGGAGGACCGGAGGAGGCTTGCGCTCATATTATCAACTATTGGGATGAATCTGAGATATGTTTATCAAGCTTCA
AAATGATAATATAACGACATTAGTTAAACTGGTCTTTAGCAATGTATGAATCTATCTGAAGGCTACATAATTCAGTTTTTTTGTATGGAGGGAGTTTCAG
AATCCATTTCAGTGTGATAATTCTCTCTGGTACCTTTCTTTTATGCATATATTCAGATTATTTGTAATCTGATGTTTACTACCGTGAATATTGAGTATTG
GACTCAATGTTCAATGGGAACCCATTTTTCATGTTATATATTCACTCGCGCGTGGCTTTGCCACGCGTGTTTTCTAGTGTGGAGATTATGTGAAAATGGT
AGACTGCAGAGAATTGCTTGCTAATGCCCA