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Detailed information on CNT30593969


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZQ12|GRF6_ARATH, E-value = 3e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30448603Eragrostis curvulaSaccharum spontaneum19.5625.7787.43167forward
CNT30340693Eragrostis curvulaEragrostis tef88.179.5895.48753forward
CNT30579587Eragrostis curvulaEchinochloa crusgalli40.6346.1486.74347forward
CNT30116324Eragrostis curvulaOryza nivara20.3720.9489.08174forward
CNT30603884Eragrostis curvulaOryza punctata20.3712.1688.51174forward
CNT30558858Eragrostis curvulaPanicum hallii35.7119.4487.54305forward

Expression of CNT30593969

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MPLTIFVIGHRLLRTSPLLSICSAASSRFWVGLCICVALIDGSPAHCIREARRYGRLGIEILVYESLMLKLHPL*

>peptide 2 (42 aa)
MKCHSLGWVGGPSEREMLQLSMMSCREHIQDHAASSCLVFHT*

>peptide 3 (29 aa)
MVKRVSAKTKVQSGKANEVSQPWLGRGAQ*

Sequence

>CNT30593969
CCGGTTTATTCGGCTGCTTTAGTTGAGTGAGCAACGATAAGCTACCCTGTGACACAGCACATGACAATGAGCCAGCAGGAGGAGCCTCCTTTGAGGTCTT
TCTAGGTTGGTTTTCCACAGGCTTTCTTGAACGGTGGCGATTTCTATTGATATGCCGCTCACAATATTTGTGATCGGCCATCGCCTCCTTCGAACATCGC
CACTTCTTTCCATCTGTTCGGCGGCATCTTCCAGGTTCTGGGTCGGACTCTGCATTTGTGTAGCCTTGATAGATGGGTCTCCAGCTCACTGCATTAGGGA
GGCTAGAAGGTATGGGCGCCTTGGCATTGAGATACTTGTATATGAGAGCCTGATGCTCAAGCTCCATCCACTGTGACGGAGTAAAAGGCCTCTTGGTCCT
GGACAGCAAGAAAGCCTGCCCATCTGGCCTTCCAAGATCCAAACCTAGATGACGAAACAAGGAGAATATCAAGCCTGACCAATGCTGAAGCAAGCAGCAA
CCTTATCTCCAGATGTACATGCATGGTTAAGCGAGTGAGTGCCAAGACAAAAGTGCAAAGCGGAAAAGCAAATGAAGTGTCACAGCCTTGGCTGGGTAGG
GGGGCCCAGTGAAAGGGAAATGCTGCAACTGTCTATGATGAGTTGCAGAGAACATATTCAAGACCATGCGGCATCTTCTTGCTTGGTTTTCCATACATGA
AAATAGATGGAATGAAAAAGCAAGGAGAAAAGGGACATGACAAAAATGATACTAGTATGTGCTGATGAGCCATCCTAACCTGAAGGCAATGTTTGAGCGG
CGGCAGCAGCCTTGGAGAACCTGAGCATCTTCTGTTCATCTAGGAAGGGGGAGG