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Detailed information on CNT30592968


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709030Eragrostis curvulaGlycine max15.7925.6288.6114forward
CNT30301323Eragrostis curvulaTriticum aestivum17.172595.97124forward
CNT30650814Eragrostis curvulaRosa chinensis10.5326.393.4276forward
CNT30344011Eragrostis curvulaEragrostis tef66.231.2888.28478forward
CNT30364601Eragrostis curvulaSorghum bicolor12.1932.3596.5988forward
CNT30149972Eragrostis curvulaBrachypodium distachyon14.2726.2893.2103forward
CNT30575210Eragrostis curvulaOryza barthii22.321.1891.93161forward

Expression of CNT30592968

Peptides detected in this lncRNA

>peptide 1 (31 aa)
IRSQASHSIPFHESKLNYKTMDDDAKNFLRH*

>peptide 2 (39 aa)
MGWDATPGADQSSRFFMFSTRCCRVSSLTTRRVTEKRIQ*

>peptide 3 (37 aa)
MRSALRCDFMMDFWWRRCSDGVQACSSLQVGRVSYFQ*

>peptide 4 (65 aa)
MGRDTGSGSVVALLHVLDALLQGVELDDEAGDGEEDPVEEQGGGDEERVALRLHDGLLVAEKRIQ*

>peptide 5 (45 aa)
MWPLEKANRPVEQQRDHRWDGTRHRERISRRASSCSRRAAAGCRA*

Sequence

>CNT30592968
TATTCGGAGCCAGGCCTCTCACTCAATACCATTCCATGAAAGCAAGTTAAATTATAAAACAATGGACGATGATGCAAAGAACTTTCTGAGGCACTAACAT
TTCCAACAACATTTTTCCAAGAGCACTGCTCTAACTTTTTATCTCACAGAGGTAGGTAATTTACTCAGATTAGATCTGAAGCAGATACTACCACCAAGTT
CTCATGTTCCGATCGAAATCTCAAGCATCCACACTACAAATAGAAGGGAAAAAAAAAAGGATCCAAAGAGGGGCATGAAAGCATGTGGCCTCTAGAGAAG
GCAAACAGACCAGTAGAACAACAACGAGACCACCGATGGGATGGGACGCGACACCGGGAGCGGATCAGTCGTCGCGCTTCTTCATGTTCTCGACGCGCTG
CTGCAGGGTGTCGAGCTTGACGACGAGGCGGGTGACGGAGAAGAGGATCCAGTAGAGGAGCAGGGCGGCGGCGATGAGGAGCGCGTTGCGCTGCGACTTC
ATGATGGACTTCTGGTGGCGGAGAAGAGGATCCAGTAGAGGAGCAGGGCGGCGGCGATGAGGAGCGCGTTGCGCTGCGACTTCATGATGGACTTCTGGTG
GCGGAGGTGCTCGGACGGGGTGCAGGCGTGCTCGTCGCTGCAGGTGGGCCGCGTCTCGTACTTCCAGTAGATGTCCATGAGCAGGAACATGCAGAAGGGC
ACCACCGACATCATCGGCTTCA