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Detailed information on CNT30590847


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 2e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Musa acuminataSetaria italica87.5353.3381400forward
CNT30530404Musa acuminataEucalyptus grandis48.5862.5484.23222forward
CNT30318541Musa acuminataCorylus avellana85.5683.3780.82391forward
CNT30703138Musa acuminataQuercus lobata44.4238.7484.73203forward
CNT30500451Musa acuminataCoffea canephora85.1236.4680.21389forward
CNT30615836Musa acuminataSesamum indicum48.3657.780.54221forward
CNT30277485Musa acuminataChenopodium quinoa68.0536.4680.39311forward
CNT3021362Musa acuminataCitrullus lanatus75.495378.84345forward
CNT30729539Musa acuminataCorchorus capsularis48.5833.0480.63222forward
CNT3068683Musa acuminataQuercus suber44.4241.2685.22203forward
CNT30486152Musa acuminataOlea europaea58.8629.7278.44269forward
CNT30504810Musa acuminataNicotiana attenuata54.738.481.2250forward
CNT30636701Musa acuminataCapsicum annuum71.1279.0880.62325forward
CNT3098150Musa acuminataSolanum tuberosum35.8933.4782.32164forward
CNT30182233Musa acuminataSecale cereale75.7155.6382.95346forward
CNT30289293Musa acuminataTriticum aestivum27.3541.1284.8125forward
CNT30222279Musa acuminataHordeum vulgare66.0810082.12302forward
CNT3084565Musa acuminataVigna radiata31.518.5280.56144forward
CNT30539234Musa acuminataBrassica napus22.111.0486.14101forward
CNT30511842Musa acuminataSolanum lycopersicum34.7934.7283.02159forward
CNT30143812Musa acuminataMedicago truncatula26.049.6284.87119forward
CNT30244810Musa acuminataAvena sativa75.7142.8282.66346forward
CNT30261302Musa acuminataBrassica rapa22.119.5486.14101forward
CNT30457014Musa acuminataSaccharum spontaneum75.7145.2982.95346forward
CNT30134072Musa acuminataLolium perenne73.7446.4282.49337forward
CNT3066796Musa acuminataLeersia perrieri75.7188.9582.37346forward
CNT30653881Musa acuminataRosa chinensis48.5820.7978.83222forward
CNT30718631Musa acuminataMalus domestica golden47.4837.882.95217forward
CNT30343308Musa acuminataEragrostis tef59.0898.5482.59270forward
CNT30477892Musa acuminataArabidopsis halleri60.8325.9879.5278forward
CNT30363710Musa acuminataSorghum bicolor28.6722.3282.44131forward
CNT30595456Musa acuminataOryza meridionalis72.8758.4281.68333forward
CNT30358465Musa acuminataLactuca sativa55.1424.1681.35252forward
CNT30424172Musa acuminataPapaver somniferum31.9520.9283.56146forward
CNT30570592Musa acuminataVitis vinifera23.6333.4481.48108forward
CNT30645151Musa acuminataCannabis sativa50.3324.1379.13230forward
CNT3054595Musa acuminataAmborella trichopoda31.9570.5384.93146forward
CNT30105598Musa acuminataOryza longistaminata43.3328.7481.82198forward
CNT30319856Musa acuminataAsparagus officinalis61.0599.6485.3279forward
CNT30574680Musa acuminataOryza barthii47.4823.6980.65217forward
CNT30580107Musa acuminataEchinochloa crusgalli73.5264.7482.74336forward
CNT30497454Musa acuminataDigitaria exilis73.5290.3282.74336forward
CNT30115589Musa acuminataOryza nivara47.4815.2180.65217forward
CNT30594668Musa acuminataEragrostis curvula68.4992.8882.11313forward
CNT30603529Musa acuminataOryza punctata47.4828.3781.57217forward
CNT30174824Musa acuminataVigna angularis89.543.0579.71409forward
CNT30550386Musa acuminataOryza brachyantha58.2196.7380.45266forward
CNT30336663Musa acuminataCynara cardunculus35.4534.6983.95162forward
CNT30723923Musa acuminataLupinus angustifolius35.898080.49164forward
CNT3064271Musa acuminataSelaginella moellendorffii69.3757.6479.5317forward

Expression of CNT30590847

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MVDLIHLQQDRLDDIVADQLEAGVSKVMHHVLLPPGEEVIDHDHVIPPGKQLVHQMAPDESGASGHNDPLRRLLQPHRHPPPTA

Sequence

>CNT30590847
CACCTATAGGATTGACATGGCCCCAATAGGTCTCCTTCTGTGGGTGCTCAAGTGGGTCACCATACACCTCACTGGTACTTGTCAATAGGAATCGAGCTCC
AATTCTCTTTGCTAAACCCAACATGTTTAGTGTTCCCATCACATTTGATATAATGGTCTTGATTGGGTTATACTTGTAGTGCACTGGCGACGCCGGGCAA
GCGAGATGGTAGATCTCATCCACCTCCAACAAGATCGGCTCGACGACATCGTGGCGGATCAGCTCGAAGCTGGGGTTTCCAAAGTGATGCACCACGTTCT
CCTTCCTCCCGGTGAAGAAGTTATCGATCACGATCACGTTATCCCCCCTGGCAAGCAGCTTGTCCACCAAATGGCTCCCGACGAATCCGGCGCCTCCGGT
CACAACGATCCGCTTCGCCGGCTTCTTCAGCCCCACAGGCACCCTCCGCCCACCGCC