Detailed information on CNT30589619


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6PL11|SKP1_ORYSJ, E-value = 3e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671307Musa acuminataSetaria viridis26.1731.4689.5567forward
CNT30315801Musa acuminataCorylus avellana53.1216.4185.29136forward
CNT30516841Musa acuminataJuglans regia49.2215.5685.71126forward
CNT3096971Musa acuminataSolanum tuberosum26.5618.2385.2968forward
CNT30303844Musa acuminataTriticum aestivum21.8822.6792.8656forward
CNT30555334Musa acuminataOryza glaberrima55.0842.9988.65141forward
CNT30666847Musa acuminataTriticum dicoccoides21.8822.4992.8656forward
CNT30143075Musa acuminataLolium perenne55.0813.483.69141forward
CNT30650073Musa acuminataRosa chinensis37.1116.3585.2695forward
CNT30686076Musa acuminataTriticum urartu55.0850.1890.78141forward
CNT30348724Musa acuminataEragrostis tef41.0212.0386.67105forward
CNT30365074Musa acuminataSorghum bicolor53.5220.9284.67137forward
CNT30592775Musa acuminataEragrostis curvula47.2749.1984.3121forward
CNT30112782Musa acuminataFicus carica40.6212.587.5104forward
CNT30114991Musa acuminataEutrema salsugineum29.37.486.6775forward

Expression of CNT30589619

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MPFSAQSSSIMCLIVCDSMATASSTSNTSPSELLSVIIFAMAA

>peptide 2 (84 aa)
QDKVEEGSLIDLDELGIPGLELVVGELGRVIRGFGGHVGKRDAVLSAVVLDHVLDRLRLHGHRLIDLEHLAIGALERDHLRHGRR

Sequence

>CNT30589619
CCAGGATAAGGTCGAAGAGGGTAGCCTGATCGACCTTGACGAACTCGGCATCCCAGGACTTGAGCTCGTCGTCGGCGAGCTTGGAAGAGTCATCAGAGGA
TTTGGAGGTCACGTTGGGAAGCGGGATGCCGTTCTCAGCGCAGTCGTCCTCGATCATGTGCTTGATCGTCTGCGACTCCATGGCCACCGCCTCATCGACC
TCGAACACCTCGCCATCGGAGCTCTTGAGCGTGATCATCTTCGCCATGGCCGCCGC