Detailed information on CNT30588080


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184327Musa acuminataSecale cereale6.4824.4188.4652forward

Expression of CNT30588080

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGKMSIPMIFLQVMQLLPQACYLHLPKLVFFNPSLRSQFHDWWS*

>peptide 2 (28 aa)
MKIFSEATMFISEHELLYKLILPLYPLIY

>peptide 3 (55 aa)
MNASVAYSTKKGSYFSSYSNTFRSNNEISSYFCYYKRKEKDPIIVYFIISPGENF*

>peptide 4 (54 aa)
AETWIYAKPFVSPFFCLLYYAPPREGDDIYRCNCQSQTHLLPPPFFRFLHPSRV*

>peptide 5 (60 aa)
RRRGSMLSPLFRLSFAYYIMRLLEKETIFIVAIARAKPICFLHPSFASCTRLEFDLLIQL*

Sequence

>CNT30588080
GGCGGAGACGTGGATCTATGCTAAGCCCTTTGTTTCGCCTTTCTTTTGCTTATTATATTATGCGCCTCCTCGAGAAGGAGACGATATTTATCGTTGCAAT
TGCCAGAGCCAAACCCATCTGCTTCCTCCACCCTTCTTTCGCTTCTTGCACCCGTCTCGAGTTTGATCTCTTGATTCAATTGTGAGTTTGCTCGTAGACG
AGCGGACGCCGTGCTGGTGGAAACTGAGTTATGATAAGAGGATGTAACTAGCTTGAGGCAACAACTGTATAACTTGCAGGAAGTTCTATGGGCAAAATGA
GCATACCTATGATTTTCTTGCAAGTTATGCAGTTGTTGCCTCAAGCTTGCTACCTCCATTTGCCAAAACTTGTGTTTTTTAACCCCTCCTTGAGAAGTCA
ATTTCATGATTGGTGGTCTTAACTGCTAGCTGTTGACTAAAGAGACCGGGAGATTTGCTTATTGGCCACCGGAGAGATGAATGCTAGTGTAGCCTATTCA
ACCAAGAAAGGTAGCTATTTCAGTAGCTATTCAAATACTTTTCGCTCAAACAATGAGATCAGTAGCTATTTCTGTTATTACAAAAGGAAAGAAAAAGACC
CAATAATCGTGTATTTCATTATATCTCCGGGTGAAAATTTTTAGAGAGAAATTAGCCAGTTAATTAATCGAAATATTGATGTGCCTGGTGCTATGGATCA
GTAGAAAAAGCTAGCGATGAAGATCTTCAGTGAAGCCACTATGTTTATTTCAGAACACGAATTGTTGTACAAGTTGATTCTACCTTTATATCCCTTAATT
TAC