« Back to Musa acuminata search


Detailed information on CNT30587177


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691649Musa acuminataOryza sativa21.047.4385.5169forward
CNT30387005Musa acuminataTriticum turgidum21.041.8986.9669forward
CNT30552698Musa acuminataOryza glaberrima21.044.6785.5169forward
CNT30253313Musa acuminataAvena sativa20.121.4989.3966forward
CNT30659808Musa acuminataTriticum dicoccoides21.044.7886.9669forward
CNT30133127Musa acuminataLolium perenne21.043.9486.9669forward
CNT309847Musa acuminataZea mays20.124.8686.3666forward
CNT30595765Musa acuminataOryza meridionalis21.045.6485.5169forward
CNT30369691Musa acuminataOryza glumipatula21.045.1685.5169forward
CNT30108723Musa acuminataOryza longistaminata21.046.7986.9669forward
CNT30329990Musa acuminataDioscorea rotundata20.433.8986.5767forward
CNT30100370Musa acuminataOryza rufipogon21.046.5285.5169forward
CNT30576256Musa acuminataOryza barthii21.045.486.9669forward
CNT30585682Musa acuminataEchinochloa crusgalli21.045.9486.9669forward
CNT30495950Musa acuminataDigitaria exilis21.045.4286.9669forward
CNT30603969Musa acuminataOryza punctata21.045.2286.9669forward
CNT30556241Musa acuminataPanicum hallii23.784.3887.1878forward

Expression of CNT30587177

Peptides detected in this lncRNA

>peptide 1 (56 aa)
VAASESSTPCSGGFQVFWVKVALRATKNFGELSIPMSFVQFMQSLPQACCLPLPEL*

Sequence

>CNT30587177
GTGGCCGCGAGTGAGAGCTCCACTCCATGCTCCGGTGGGTTCCAAGTGTTTTGGGTAAAGGTTGCCCTTCGGGCGACAAAAAATTTTGGTGAATTGAGCA
TACCTATGAGTTTCGTGCAATTTATGCAGTCGCTGCCTCAAGCTTGTTGCCTCCCTTTGCCAGAACTCTGAAGAAATTATTGTCAGCTCGGATTTCATAT
CTGATGGATTATTGATTCTGTTTATTAACAGTGCATCTGTTAATTGTGACAAGGTCTTGTATTTTGGAGAGACAAATGTTGTGGAAGTATTATCTTTTAA
ACTCATCATACTTTTATATATTCTCATA