Detailed information on CNT30586652


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316626Musa acuminataCorylus avellana25.244.0381.33225forward
CNT30703861Musa acuminataQuercus lobata18.8165.6283.33168forward
CNT30500052Musa acuminataCoffea canephora18.0361.4580.75161forward
CNT3070513Musa acuminataQuercus suber18.8124.6782.14168forward
CNT30566888Musa acuminataActinidia chinensis14.6726.3181.68131forward
CNT30146672Musa acuminataMedicago truncatula9.8537.1382.9588forward
CNT30472864Musa acuminataSaccharum spontaneum17.3626.1880.65155forward
CNT30133477Musa acuminataLolium perenne12.6555.9482.3113forward
CNT30479817Musa acuminataArabidopsis halleri13.3332.3481.51119forward
CNT30152051Musa acuminataPrunus persica20.0422.880.45179forward
CNT30704154Musa acuminataPrunus avium20.0422.5280.45179forward
CNT3022456Musa acuminataPopulus trichocarpa16.0120.5580.42143forward
CNT30328921Musa acuminataAsparagus officinalis12.6521.1284.96113forward
CNT30114984Musa acuminataEutrema salsugineum10.7533.3384.3896forward

Expression of CNT30586652

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSCTHNSSFRISLDRKKREVYFKINIMNSKRNKRMEGNIQSY*

>peptide 2 (43 aa)
KNAQSFTIFNTLTMTPNAITSRGVQTIKNQTEPNYFFGSTRLR*

>peptide 3 (58 aa)
MQITQQPFKNIWKMFGHLSTRIREECRTFSMYSLQHHTYHPSQHLPKHMIQVQPSPRV*

>peptide 4 (75 aa)
MEDVRSPFHEDKGGVSDVLHVFIAASYLSPFTASAEAYDSSSAISSGVSFTDSAPIFWLKFSILVVPGIGHTSLP*

Sequence

>CNT30586652
GAAAAAATGCACAATCGTTCACGATATTTAACACATTAACCATGACCCCAAATGCAATTACCTCTAGGGGTGTTCAAACCATTAAGAATCAAACCGAACC
AAACTATTTTTTCGGTTCGACTCGGTTAAGGTAGCCTACACCAAAACTGATTTGATTTTTTGGTTCGATTATTTGATCGAATAACTAGCAGGAGCTGAAA
CAACTCAACCAGAAGATTTTGTTCTCTAATATTGGTGACTATAGACAACAAAGTATCGAGCAAAAGCCTCCTAGGGAGTTCATTTTCATGCAAATCACAC
AACAACCATTCAAGAACATATGGAAGATGTTCGGTCACCTTTCCACGAGGATAAGGGAGGAGTGTCGGACGTTCTCCATGTATTCATTGCAGCATCATAC
CTATCACCCTTCACAGCATCTGCCGAAGCATATGATTCAAGTTCAGCCATCTCCTCGGGTGTGAGTTTTACTGATAGTGCTCCGATATTCTGGTTAAAGT
TTTCGATCTTGGTAGTGCCAGGTATAGGGCACACATCACTTCCTTGACGGTGAACCCAGGCCAAAGCAAGTTGTGAAGGGGTGCATCCCTTCCTCTTGGC
CATTTCGTTTACACGTTCAAAGATAAGTGCATTTTGAGCGAGATTCTCAGGCTGAAACCTAGGCATGAGCTGCACACATAATTCATCATTCAGAATATCA
TTAGACCGAAAAAAAAGAGAAGTTTACTTTAAGATAAACATAATGAATTCAAAACGAAATAAAAGAATGGAGGGGAATATACAATCCTATTGACACTACG
GAACACAGAGTTAATTAACATGAAATAAATGCTCCATTCAAGGTGATTGTAGTCATGGATGTTTAGTAGGCATTCACTAATGTGATTATAATC