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Detailed information on CNT30584428


BLAST search results

BLAST vs Swiss-Prot:
sp|P27789|FER5_MAIZE, E-value = 1e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695489Echinochloa crusgalliOryza sativa20.4628.992.49213forward
CNT30675769Echinochloa crusgalliSetaria viridis20.0833.693.78209forward
CNT30307945Echinochloa crusgalliTriticum aestivum23.0537.8588.75240forward
CNT30398830Echinochloa crusgalliTriticum turgidum23.0533.2488.33240forward
CNT30670012Echinochloa crusgalliTriticum dicoccoides23.0535.3587.92240forward
CNT3011815Echinochloa crusgalliZea mays21.3326.5291.89222forward
CNT30683972Echinochloa crusgalliTriticum urartu23.0534.8388.33240forward
CNT30596741Echinochloa crusgalliOryza meridionalis20.4626.4392.96213forward
CNT30370929Echinochloa crusgalliOryza glumipatula20.4627.7792.49213forward
CNT30103152Echinochloa crusgalliOryza rufipogon20.4625.5492.49213forward
CNT30117400Echinochloa crusgalliOryza nivara20.4624.5792.49213forward

Expression of CNT30584428

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MYTSSGTCSSTSPSGVMSLTLYVACARSLAALLVVVAAGMATVAGAGAGATRREKAGARRLLRAVAICASLIIAVASCSS*

>peptide 2 (71 aa)
ELNKGSLIKCIYIGLKNLYPSLYIHRCMHQIYILKLHILKIHIYSGNYSVATRTCRMYFSYIYIYIPYVHI*

>peptide 3 (29 aa)
MVQWLVMSLNNYAVSSSSLCVSMTTSEVG*

Sequence

>CNT30584428
TGAATTGAATAAAGGGAGCTTAATTAAGTGCATATACATTGGATTAAAGAACTTATATCCTTCATTATATATACATCGATGCATGCATCAAATATATATA
CTCAAGCTGCATATACTCAAGATACATATATACTCAGGTAATTATAGTGTAGCTACACGCACGTGTAGAATGTATTTTTCCTATATATATATATATATAC
CGTACGTACACATATAGTATGTACTATGCATGTATGTATCTTGATTGATGGTACAAAATCAAGGAGGAAAAACATACATTATGGATAACTTGAGCAAGCA
AGCCGGTCATGCATCCGCAGTAATAAAATGAATTATACAAGAGAGACCAATGCAAGCAGCTAGCTGTAGTACTGTGGATGCTAGGTAATTGAATTGGTCG
TCTCAATAAGCTAACATGCATGACACGATGGACGACTAGGAAATTCGATTCCGTCAACTCGATCGATCTTATCTCTTGCAATTAATTAAGACGTACGGAT
ATATATATATAGAGCTAGATCATAGCAACAAGCAGCAGCTAGCGTTGATCATATCGTGAACGTTGATGGTGCAGTGGCTGGTGATGAGCCTAAATAATTA
TGCGGTGAGCTCCTCCTCCTTGTGCGTCTCGATGACGACGTCGGAGGTGGGGTAGGCGGCGCAGGTGAGGACCCATCCGCCGGCGACCTGGTCGTCGTCG
AGGAAGCTCTGGTCGGACTGGTCGATCCCTTCCTCCTCGGCCTGGTCCAGGATGTACACGTCGTCGGGCACCTGCAGCTCCACCTCGCCATCAGGCGTGA
TGAGCTTGACGTTGTACGTGGCCTGCGCGCGCAGCCTTGCCGCCCTCTTGGTGGTGGTGGCGGCGGGCATGGCGACGGTGGCCGGCGCCGGGGCCGGGGC
GACCCGGAGGGAGAAGGCCGGAGCGCGGAGGCTGCTGAGGGCGGTGGCCATTTGTGCAAGCTTGATTATTGCTGTAGCTAGCTGCAGCAGCTGAGCTAGC
TGCTAGCTAGGAATGAAAGAAGCAATGGACGGACAATAGCG