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Detailed information on CNT30584157


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691018Echinochloa crusgalliOryza sativa9.7221.2289.8359forward
CNT30670622Echinochloa crusgalliSetaria viridis27.5140.5389.22167forward
CNT30520004Echinochloa crusgalliSetaria italica43.1651.3789.69262forward
CNT30302147Echinochloa crusgalliTriticum aestivum20.9248.8581.1127forward
CNT30461578Echinochloa crusgalliSaccharum spontaneum12.1924.1891.8974forward
CNT30150238Echinochloa crusgalliBrachypodium distachyon15.3223.2582.893forward

Expression of CNT30584157

Peptides detected in this lncRNA

>peptide 1 (43 aa)
NIEQDKHFVQIPSKIQKLIGTRPCLDNYKRPMSSSQYSKTETL*

>peptide 2 (93 aa)
MLGLLTFFQHLGAAKDLRHHCHCHCHCHCRCHRGTHHARAAALVTCYSSSWLEEAVATCSVLGLVVVTCCCFAGVAAVVTCCSSVHERVEVTC*

Sequence

>CNT30584157
CAAACATCGAACAAGATAAGCACTTTGTCCAAATTCCAAGCAAAATACAAAAACTCATAGGAACCAGACCTTGTCTTGACAACTACAAGCGTCCAATGTC
ATCCAGTCAATACTCCAAAACAGAAACGTTATAGGCTCCTGCCTCCACAATTGTATCAGCAGCGATGTCCTCTCAGGAAACAGAAAAACACTGACACGAA
ATGGAAGAATTTGAATCCTATAGAATTACATAAGTTGTATTGATGCGGCCAGGCAAAACATGCTGGGGCTCCTAACATTTTTCCAGCATCTTGGAGCAGC
CAAGGATCTTAGGCATCATTGCCATTGCCATTGCCATTGCCATTGCCGTTGCCATAGGGGGACTCATCACGCTCGGGCTGCTGCCCTGGTGACCTGCTAT
AGCTCCTCCTGGCTGGAGGAGGCGGTGGCGACCTGCTCAGTTCTCGGGCTGGTGGTGGTGACCTGCTGTTGTTTCGCGGGGGTGGCGGCGGTGGTGACCT
GCTGTAGCTCCGTGCACGAGCGGGTGGAGGTGACCTGCTGAGACTCCGTGCACGAGGCGGCGGTGGCGACCTGCTGTAACTTCGCCTCTTAGGAGAACGA
TCCCGCG