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Detailed information on CNT30584129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Echinochloa crusgalliOryza sativa17.5220.338875forward
CNT30225098Echinochloa crusgalliHordeum vulgare22.234.1784.2195forward
CNT30396861Echinochloa crusgalliTriticum turgidum28.9717.0383.06124forward
CNT30253461Echinochloa crusgalliAvena sativa29.4414.6982.54126forward
CNT30667276Echinochloa crusgalliTriticum dicoccoides28.9723.2683.06124forward
CNT30460356Echinochloa crusgalliSaccharum spontaneum40.1935.9190.7172forward
CNT30143360Echinochloa crusgalliLolium perenne26.8713.0283.48115forward
CNT3066989Echinochloa crusgalliLeersia perrieri21.268.8589.0191forward
CNT30149601Echinochloa crusgalliBrachypodium distachyon27.813.2789.92119forward
CNT30603733Echinochloa crusgalliOryza punctata31.5425.4786.67135forward
CNT30556342Echinochloa crusgalliPanicum hallii38.5510.4893.33165forward

Expression of CNT30584129

Peptides detected in this lncRNA

>peptide 1 (82 aa)
LHHTSLSSRSRPLARADAKKKKLLTGHGSPIRSGDVGDGRLPGQDRRRVLLVLLRLLLQHPRLPVLFVLIDRCCFSPALRKL*

>peptide 2 (55 aa)
MLLLPGPAETLDALNFLDCLGPSVMIFVSSSLSISKETCRVLKYRVVFKSEVSFF*

>peptide 3 (42 aa)
MDPPSAQVMSATEDFQDKTVDECCSCCYDCCSSILDFLCCSS*

>peptide 4 (33 aa)
SPHISFFSESTARPRGREKEETTDWPWIPHPLR*

Sequence

>CNT30584129
CTTCACCACACATCTCTTTCTTCTCGGAGTCGACCGCTCGCCCGCGCGGACGCGAAAAAGAAGAAACTACTGACTGGCCATGGATCCCCCATCCGCTCAG
GTGATGTCGGCGACGGAAGACTTCCAGGACAAGACCGTCGACGAGTGTTGCTCGTGCTGCTACGATTGCTGCTCCAGCATCCTCGACTTCCTGTGCTGTT
CGTCTTGATCGATCGATGCTGCTTCTCCCCGGCCCTGCGGAAACTTTAGATGCCCTGAACTTCTTAGATTGTTTAGGCCCTTCGGTGATGATATTTGTAA
GTTCGTCTCTATCCATCAGTAAGGAAACTTGTAGAGTGCTGAAATACCGAGTTGTCTTCAAATCTGAGGTGAGTTTCTTTTAGAAATTTTACTACGTGTT
TGCAGAACGATTAGCTGTTTGGAATCCG