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Detailed information on CNT30583952


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098150Echinochloa crusgalliSolanum tuberosum24.3422.6586.49111forward
CNT30511842Echinochloa crusgalliSolanum lycopersicum24.3424.2485.59111forward
CNT30457014Echinochloa crusgalliSaccharum spontaneum84.2150.2693.23384forward
CNT30653881Echinochloa crusgalliRosa chinensis51.3221.9181.62234forward
CNT30355562Echinochloa crusgalliLactuca sativa38.8230.3680.23177forward
CNT3054595Echinochloa crusgalliAmborella trichopoda44.5298.0781.28203forward
CNT30497454Echinochloa crusgalliDigitaria exilis81.5810095.16372forward

Expression of CNT30583952

Peptides detected in this lncRNA

>peptide 1 (48 aa)
TYRINMPPVSLFLWMLKWIAINFTCASQQEPCANSFCQTQHIQGSHDI*

>peptide 2 (56 aa)
MRDILLPSREEIVDHDHTVSLLQQPVHEVAADEPGPAGDDDPARRRAVPGGDAGAGG

Sequence

>CNT30583952
ACCTATAGGATTAACATGCCCCCAGTAAGTCTCTTTCTGTGGATGCTCAAGTGGATCGCCATAAACTTCACTTGTGCTAGTCAACAAGAACCTTGCGCCA
ATTCGTTTTGCCAAACCCAACATATTCAAGGTTCCCATGACATTTGATATGATCGTCTTGATCGGGTTGTACTTGTAGTGCACGGGCGACGCGGGGCACG
CGAGGTGGTAGATCCGGTCGACCTCGAGGAGGATTGGCTCGACGACATCGTGGCGGAGCAGCTCGAACCTTGGGTTCCGGAGGTGATGCGCGACATTCTC
CTTCCTTCCCGTGAAGAAATTGTCGACCACGATCACACTGTCTCCCTGCTCCAGCAGCCGGTCCACGAGGTGGCTGCCGACGAACCCGGCCCCGCCGGTG
ACGACGACCCGGCGCGGCGGCGGGCGGTACCCGGCGGGGACGCCGGAGCGGGAGGC