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Detailed information on CNT30583511


BLAST search results

BLAST vs Swiss-Prot:
sp|P04711|CAPP1_MAIZE, E-value = 3e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673569Echinochloa crusgalliSetaria viridis26.5674.2992.31234forward
CNT30374052Echinochloa crusgalliArabidopsis thaliana8.0625.1887.3271forward
CNT3016300Echinochloa crusgalliZea mays25.993789.96229forward
CNT30368707Echinochloa crusgalliSorghum bicolor25.9929.492.14229forward
CNT30596912Echinochloa crusgalliOryza meridionalis10.4421.9688.0492forward
CNT30148536Echinochloa crusgalliBrachypodium distachyon9.9941.1290.9188forward
CNT30557292Echinochloa crusgalliPanicum hallii25.9929.3691.7229forward

Expression of CNT30583511

Peptides detected in this lncRNA

>peptide 1 (32 aa)
IHKTHGISYLYKIMFTNHKYNIILHILLTRRA*

>peptide 2 (40 aa)
MPGSPLAKTISTRSSVTLKNGHSLYISLSVWMFLTSFLMA*

>peptide 3 (59 aa)
MPAAIPFMVRMSVSSSPGPYSLAGFSFTSPAGLFSSANSLDSGGFSVTLKFGSLILLSV*

Sequence

>CNT30583511
GATACACAAAACGCATGGTATATCATATTTGTATAAGATCATGTTCACAAATCACAAGTACAATATCATATTACATATTTTATTAACCCGTAGGGCATAA
TTGCCAGTTATTACAAAATACTTAAGCAGCCAACAGAGTTCCACGTACTTAAACATTACATCATGTGTGAATTCGGAAAAGACACTTAAGGCTTATATAG
TAGGAAACTTAACAGTAGTATAGGTGTGAATATATATATTGAAAAAGACCTCCACAAGCTGGTGCTTCATCAGCCGTGAGCACTCTGCAGTGTGAAGTAC
GTGCGAAGCAGTATGTAGAGCACCCCTCTAGCCGGTGTTCTGCATGCCGGCCGCAATACCCTTCATGGTGAGGATGAGCGTGTCCTCCAGCCCCGGCCCG
TACTCGCTCGCCGGGTTCAGCTTCACCAGCCCGGCGGGCTTGTTCTCGTCGGCGAACTCCTTGGACAGCGGCGGGTTCAGCGTCACCTTGAAGTTCGGGT
CCCTAATTCTCTTGAGCGTGTAGGCCTGGAACACGTTCAGCGTCGTGATGTAGGGGTCCCGCAGGCGCAGGTCGTTGTAGAAGCCGACGATGCCGGGGTC
CCCCTTGGCGAAGACCATCTCGACCAGGTCCAGCGTGACCCTGAAGAATGGCCACTCGTTGTACATCTCCTTGAGCGTCTGGATGTTCCTGACGTCCTTC
TTGATGGCGTAGTTGAACGCGGCGCCGAACCCCAGCCACACCGGCAGGTGGAACCTCGTCTGCGTCCACGAGAAGATCCACGGGATCGCGCGCAGCGACT
CGATGCCGCCGCCCGGCTTCCTCTTCGCCGGCCGGCTGCCGATGTTGAGCCTCCCGTACTCCGTCTCCGGCGTAGCCTGCC