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Detailed information on CNT30583436


BLAST search results

BLAST vs Swiss-Prot:
sp|P04711|CAPP1_MAIZE, E-value = 1e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521774Echinochloa crusgalliSetaria italica34.8712.191.19318forward
CNT30193220Echinochloa crusgalliSecale cereale28.0728.8987.5256forward
CNT30140847Echinochloa crusgalliLolium perenne27.343.6885.54249forward
CNT30369646Echinochloa crusgalliOryza glumipatula28.1848.3179.77257forward
CNT30497176Echinochloa crusgalliDigitaria exilis28.425.7787.26259forward
CNT30115905Echinochloa crusgalliOryza nivara28.1848.0480.16257forward

Expression of CNT30583436

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPAAIPFMVRMSVSSSPGPYSLAGFSFTSPAGLFSSANSLDSGGFSVTLKFGSLILLSV*

>peptide 2 (40 aa)
MPGSPLAKTISTRSSVTLKNGHSLYISLSVWMFLTSFLMA*

Sequence

>CNT30583436
GTACAATATCATATTACATATTTTATTAACCCGTAGGGCATAATTGCCAGTTATTACAAAATACTTAAGCAGCCAACAGAGTTCCACGTACTTAAACATT
ACATCATGTGTGAATTCGGAAAAGACACTTAAGGCTTATATAGTAGGAAACTTAACAGTAGTATAGGTGTGAATATATATATTGAAAAAGACCTCCACAA
GCTGGTGCTTCATCAGCCGTGAGCACTCTGCAGTGTGAAGTACGTGCGAAGCAGTATGTAGAGCACCCCTCTAGCCGGTGTTCTGCATGCCGGCCGCAAT
ACCCTTCATGGTGAGGATGAGCGTGTCCTCCAGCCCCGGCCCGTACTCGCTCGCCGGGTTCAGCTTCACCAGCCCGGCGGGCTTGTTCTCGTCGGCGAAC
TCCTTGGACAGCGGCGGGTTCAGCGTCACCTTGAAGTTCGGGTCCCTAATTCTCTTGAGCGTGTAGGCCTGGAACACGTTCAGCGTCGTGATGTAGGGGT
CCCGCAGGCGCAGGCGCTGCTTCAGGAGAAGCTGCACTGTGTCGATGTAGTTCTTCCTGAGCTGCTCCCCGAAGGGCTTGAGTTCGTCGGCGACAAGCAG
GTCGTTGTAGAAGCCGACGATGCCGGGGTCCCCCTTGGCGAAGACCATCTCGACCAGGTCCAGCGTGACCCTGAAGAATGGCCACTCGTTGTACATCTCC
TTGAGCGTCTGGATGTTCCTGACGTCCTTCTTGATGGCGTAGTTGAACGCGGCGCCGAACCCCAGCCACACCGGCAGGTGGAACCTCGTCTGCGTCCACG
AGAAGATCCACGGGATCGCGCGCAGCGACTCGATGCCGCCGCCCGGCTTCCTCTTCGCCGGCCGGCTGCCGATGTTGAGCCTCCCGTACTCCGTCTCCGG
CGTAGCCTGCCG