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Detailed information on CNT30583031


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y886|PLAS_ORYSI, E-value = 1e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673857Echinochloa crusgalliSetaria viridis25.432.3195.45220forward
CNT30373121Echinochloa crusgalliArabidopsis thaliana9.721.4383.3384forward
CNT30391774Echinochloa crusgalliTriticum turgidum15.3622.588.72133forward
CNT30443574Echinochloa crusgalliAegilops tauschii33.9553.6585.71294forward
CNT30663028Echinochloa crusgalliTriticum dicoccoides19.1735.3286.14166forward
CNT30141888Echinochloa crusgalliLolium perenne33.2654.2486.46288forward
CNT3010819Echinochloa crusgalliZea mays24.657.191.55213forward
CNT30368525Echinochloa crusgalliSorghum bicolor24.4835.9394.81212forward
CNT30370409Echinochloa crusgalliOryza glumipatula34.0637.8786.78295forward
CNT30148503Echinochloa crusgalliBrachypodium distachyon21.2558.7986.41184forward
CNT30116921Echinochloa crusgalliOryza nivara29.5638.3287.11256forward

Expression of CNT30583031

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLAIKLVNTTHAAGQQAKQQCTNKDHIISLFL*

>peptide 2 (33 aa)
MRPGSKLSSNAQIKTISYLSFSSLVGWKKMVGR*

>peptide 3 (90 aa)
MVSPALTENSLGSKTRTPPLAPSSTSWAMAPPASRALAATATAAVPAALPREARTVTDDLRLQGTARAGRKEGAVTAAEEREAIVCLIDR*

Sequence

>CNT30583031
AAAACACTTGCTAATTGATTTCTTGATGAGTCGAAAGACTAGCTAGGAAATATATACATACATACTGAGCTGACGGAGATATACAAAATAATTTTATACT
GTAGCAAACAAATGGAAAAGGAGAGGGCGGGCAATAGCATGCTTAATAACTTAATAATAATTGATGTAGCAATAGCATGCTTGCAATTAAATTAGTAAAT
ACTACACATGCGGCCGGGCAGCAAGCTAAGCAGCAATGCACAAATAAAGACCATATCATATCTCTCTTTCTCTAGCTTGGTTGGATGGAAGAAGATGGTA
GGTAGGTGATGGTCGACGATGATTAGTTAACGGTGACCTTGCCGACCATTCCTGCTCCTTGGTGCGGCTCGCAGTAGAAGCTGTAGGTTCCCGGGACGGT
GAGGGTGACGGTGTAGGTCTCGCCTGGGGCGTTGAGGTACTCCTCCTGCGAGATCTTGGCGGCGTCGACTCCGCTGGGCACCTCGTCCTCGTCGAAGACG
ACGTTGTGCGGGTAGCCGGCGTTGTTCTTGAAGGTGATGGTGTCGCCGGCCTTGACGGAGAACTCGCTGGGCTCGAAGACGAGGACGCCTCCGTTGGCGC
CGAGCAGCACCTCCTGGGCCATGGCGCCGCCGGCCAGCAGGGCGCTGGCGGCGACGGCGACGGCGGCGGTGCCGGCGGCTCTGCCGAGGGAGGCGCGCAC
GGTGACTGATGACCTCCGGCTGCAGGGAACGGCACGGGCGGGGCGGAAGGAAGGGGCGGTGACGGCGGCAGAGGAGAGGGAGGCCATTGTTTGTTTGATA
GATAGATAGATACGGCGGCGATGGTGGAGGAGCAAGAGATTAAAAGGTACGGGAGGGAGCAGCAAC