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Detailed information on CNT30582964


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672335Echinochloa crusgalliSetaria viridis19.2840.2593.75128forward
CNT30520345Echinochloa crusgalliSetaria italica17.1739.5889.47114forward
CNT30588826Echinochloa crusgalliMusa acuminata14.0143.2683.8793forward
CNT30655679Echinochloa crusgalliTriticum dicoccoides22.8918.1291.45152forward
CNT30471318Echinochloa crusgalliSaccharum spontaneum22.8914.0296.05152forward
CNT30648126Echinochloa crusgalliRosa chinensis16.7224.2982.88111forward
CNT30679210Echinochloa crusgalliTriticum urartu22.8939.4891.45152forward
CNT30349942Echinochloa crusgalliEragrostis tef22.7412.5995.36151forward
CNT30596880Echinochloa crusgalliOryza meridionalis11.627.0287.0177forward

Expression of CNT30582964

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVQLLQSLSHQVHEKPKSWLCMHVLNSILLPKTCQAFLFP*

>peptide 2 (32 aa)
MKNPRAGCACMCLTLYYYQRLAKPFFSPEIKT*

>peptide 3 (35 aa)
CCSSSIFLDYKGVTFYFIKTMIYGTTFTITITSST*

Sequence

>CNT30582964
CTGCTGCTCAAGTAGTATTTTTCTCGATTATAAAGGGGTTACATTTTATTTCATTAAAACAATGATATATGGTACAACTTTTACAATCACTATCACATCA
AGTACATGAAAAACCCAAGAGCTGGTTGTGCATGCATGTGCTTAACTCTATACTATTACCAAAGACTTGCCAAGCCTTTCTTTTCCCCTGAGATCAAGAC
TTGACAAACTTGTTACTAGCTAGAACAAGATATCACCACACCATGCCACTATATATAGTGTATAGTTAACACAGTGAAACACCTCAAACACTAACCCATA
TTTATTTCTCCAGACTTATACCCAACAAACCAATAAATAACTATTTTTAAATCTTACTAATATGTTCCTTCTTCTTACTTTTTTATTTAATTTTAAGCCG
CCGGAGATGACTTGGGCGCCTTAACGGCCTCGAACCTTGGCTCCTTGGCCTGGAACTTCTGCTTGGCATACACATCCATGTAGTCTCCGAACACGTACTT
GGGGTACGCGCCGCCGCCGACCTGGTCGTCCTGGAACAGCAGGATCACGCCGCCGGCGTCCGTGTGCGCGCGCAGGCCCGTGATGAGGTCCGGCCGCGGG
CACGGCGGGTAGTGGCTGACCTTGGTGCCGAAGAAGGGCTCGTGGCGGCCGTCGCCGGAGAAGG