« Back to Echinochloa crusgalli search


Detailed information on CNT30581501


BLAST search results

BLAST vs Swiss-Prot:
sp|P42051|PSAK_CUCSA, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694964Echinochloa crusgalliOryza sativa26.3518.0692.31117forward
CNT30520562Echinochloa crusgalliSetaria italica35.3635.0496.82157forward
CNT30289849Echinochloa crusgalliTriticum aestivum32.6635.5493.79145forward
CNT30436322Echinochloa crusgalliAegilops tauschii30.8632.3994.16137forward
CNT30242614Echinochloa crusgalliAvena sativa39.1948.7493.68174forward
CNT30659915Echinochloa crusgalliTriticum dicoccoides32.6639.9493.79145forward
CNT30611008Echinochloa crusgalliArabis alpina31.9853.5880.99142forward
CNT30102731Echinochloa crusgalliOryza rufipogon32.2129.1895.1143forward
CNT30118070Echinochloa crusgalliOryza nivara25.2320.0492.86112forward

Expression of CNT30581501

Peptides detected in this lncRNA

>peptide 1 (77 aa)
IKLAYQHRDRDPVRNVRVLPELCASNFKLFCSKFQQIRSNSGGKRRNKLCPLEQDATHAREPNYIWHRPAGRRRGFR*

Sequence

>CNT30581501
ATTAAACTAGCATATCAGCATAGGGATCGAGACCCCGTTCGGAACGTGCGTGTACTTCCCGAATTATGTGCTAGCAACTTTAAACTATTTTGTTCGAAAT
TTCAGCAAATTCGCTCCAATTCGGGGGGCAAGAGGAGGAACAAGCTATGTCCATTGGAACAAGACGCGACGCACGCACGTGAACCCAATTACATATGGCA
CCGGCCAGCCGGCCGGCGGCGAGGCTTCCGGTGAACAGTGTAGTCTGATCGATCTAGCCGACGATCTGGTCGAGCGCGCCGGCGAGCGTGTCGGCGAGGG
TGAACCCGGCGGGGTCGCCGGTCTGCAGCCCGGAGTCGCGGGACTCCAGCTTGAGCCCCGCCGTCGCCTTCCTGTTCGCCGACGGCGCCAGCCCGAACCG
CCCCGCGAACAGCATCAGCGTCGTCGACACCACCATGATCTACA