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Detailed information on CNT30581445


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41048|PSBQ1_MAIZE, E-value = 1e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671430Echinochloa crusgalliSetaria viridis20.8157.1499.31144forward
CNT30520717Echinochloa crusgalliSetaria italica44.5142.1991.88308forward
CNT30179895Echinochloa crusgalliSecale cereale24.2863.1688.69168forward
CNT30290295Echinochloa crusgalliTriticum aestivum29.7731.7490.29206forward
CNT30385644Echinochloa crusgalliTriticum turgidum29.1925.8691.09202forward
CNT30554363Echinochloa crusgalliOryza glaberrima34.681089.17240forward
CNT30659718Echinochloa crusgalliTriticum dicoccoides34.393589.5238forward
CNT30453977Echinochloa crusgalliSaccharum spontaneum29.4868.9294.12204forward
CNT304156Echinochloa crusgalliZea mays30.3551.9893.81210forward
CNT30680164Echinochloa crusgalliTriticum urartu34.3936.5690.76238forward
CNT30351417Echinochloa crusgalliEragrostis tef17.0554.8897.46118forward
CNT30362913Echinochloa crusgalliSorghum bicolor26.5965.7190.22184forward
CNT30370617Echinochloa crusgalliOryza glumipatula24.4261.4591.72169forward
CNT30148624Echinochloa crusgalliBrachypodium distachyon29.9149.2989.86207forward
CNT30496557Echinochloa crusgalliDigitaria exilis28.4783.8397.46197forward
CNT30117138Echinochloa crusgalliOryza nivara24.4214.0591.12169forward

Expression of CNT30581445

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MAYIVDGAEELAGELLEVVAQVGGPEAEVVHDVRPRLLVDERLEVEDVLRRRLGPRRGLRRRQRLQVEPLLQGEVEVPGLVRVQGPGCATGNWKRRR*

>peptide 2 (36 aa)
MTYGHAFLSMSGLRLRMSCADVLALAAASAGGSGCR*

Sequence

>CNT30581445
GCATGGCTTACATCGTCGATGGTGCTGAAGAGCTTGCCGGTGAGCTCCTTGAGGTCGTAGCGCAGGTAGGAGGCCCGGAGGCGGAGGTCGTTCATGACGT
ACGGCCACGCCTTCTTGTCGATGAGCGGCTTGAGGTTGAGGATGTCCTGCGCCGACGTCTTGGCCCTCGCCGCGGCCTCCGCCGGCGGCAGCGGCTGCAG
GTAGAACCGCTCCTTCAGGGCGAGGTCGAAGTCCCTGGCCTGGTCAGAGTTCAAGGTCCCGGCTGTGCCACAGGAAATTGGAAGCGGAGGCGTTAGGCGG
ATTTGTCCCGGTTTTACTTTTACAAGAGCCATTATTACACAGCGAAATTTGCACAAAATAATCTGCTGATTAGGCGGGGTTCCATGTTCAGGTGATGGAT
CACTGCATTCTGCACCTTTGTGGCCATGCTTTATTTACTACTGGTTGATCTTTACAAGGGTCGGCACAGTTTTTAATTTGTTCGTTAATAAAATGCAGAG
GCTGATGATTTTTTTTAGAGGAAATGCAGCCCTTGAAAAAACAATCAAAAGCTGACAGGTTGACAGGAGTAAAAAACTAAACACCTATTCTGGACTAGTG
ATCAAGATTCAACAGGTGTGAAACGCTTGCTGGAAACATCTTCCAGTAGTATCAAAGAGGGAGGAAAAAAAAAGTTGTGAGGTGCAGCCGTG