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Detailed information on CNT30581348


BLAST search results

BLAST vs Swiss-Prot:
sp|Q69UI1|RS132_ORYSJ, E-value = 2e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694623Echinochloa crusgalliOryza sativa32.9831.4988.86341forward
CNT30675786Echinochloa crusgalliSetaria viridis11.836.4281.97122forward
CNT30307182Echinochloa crusgalliTriticum aestivum11.4131.2285.59118forward
CNT30436841Echinochloa crusgalliAegilops tauschii34.1453.0888.39353forward
CNT30131980Echinochloa crusgalliLolium perenne18.6731.4391.19193forward
CNT30688700Echinochloa crusgalliTriticum urartu11.4128.585.59118forward
CNT30350258Echinochloa crusgalliEragrostis tef47.8746.1889.7495forward
CNT30117171Echinochloa crusgalliOryza nivara26.537.4384.31274forward
CNT3064134Echinochloa crusgalliSelaginella moellendorffii6.0929.8690.4863forward

Expression of CNT30581348

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MLTGRLTKNWPIEVPSQLLSPRRARENFL

>peptide 2 (32 aa)
PSFLLHSELSMTIRPYSITNLLNVKPTPNHFE*

>peptide 3 (34 aa)
MPFPGPYMRPMATDGGEEGERVSDKCGGGGETET*

>peptide 4 (30 aa)
MAENPHDTAFIVVAYCENPILGRSTRRSPL*

Sequence

>CNT30581348
ACCAAGTTTCTTGCTTCATTCTGAACTATCGATGACCATACGTCCATACAGTATTACCAACCTACTAAACGTTAAACCAACTCCAAACCATTTTGAATAA
TCTAGCTCCCAAGGACTAAATCCTGATCCAGTCTCATAAACCCTCAAGTCTGAAGATACATACTTCTTCCTAGGTGCATGAGGTAGATAAATTTAACACC
TACACCTTACATACCAAAAAAAACTACTTTCACTTAGCTTAGGATTAAGGTAAACTCCAAAGATGTAGAGACTGAATTCACAGGAACCAAGAAACTCAAA
CGAAACGGCGCTCACGCCACCAGAGTGCTCGCGGTGATGGACTCGTACTTAAAGGCGGCGGGGATCTTCTTGGCGCGGCGGTAGTAGCGGGTGAGGCGGT
GGACCCTGCTCTCGACGAGGATGAGGCGGAACTTGGCGTCCACGTCCGTCCGGTTCCTGTCCAGGTGCTTCCTGATCGCGACGGCCTTCTTGATGAGGAA
GTAGAGGTCCTCGGGCACCTCCGGCGCGAGCCCGCGGGCCCTGAGCACGCGCAGGATCTTGCTGCCCGTGACTCCGCGGACCAGCGGCACGCCGTGCTGG
TCGCGGAGCAGCGTGCCGATCTGCGACGGCAGCTGGCCCTTCTTGGCGGCGCGCACGATCGCGTCCTCCAGCTCCGACGCGGACCACCTGACCCAGGCCG
GGGCGGAGCGGGAGTAGGGCAGCACCGACGAGGACATGCCCTTCCCGGGACCGTACATGCGGCCCATGGCGACGGACGGCGGCGAGGAGGGAGAGCGAGT
GAGCGACAAGTGCGGCGGCGGCGGCGAGACGGAAACCTAAAAATGGCCGAAAACCCACACGATACCGCTTTTATAGTGGTGGCGTATTGCGAAAACCCTA
TCCTGGGCCGATCCACACGTCGAAGCCCATTATAAGCCCAACAAGATGCTGACCGGCCGCTTGACCAAAAATTGGCCCATTGAAGTGCCCTCCCAACTTC
TGAGCCCAAGAAGAGCCCGTGAGAACTTCTTGCA