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Detailed information on CNT30580802


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30341799Echinochloa crusgalliEragrostis tef23.3124.3493.64110forward
CNT30499286Echinochloa crusgalliDigitaria exilis25.2128.3394.12119forward
CNT30593653Echinochloa crusgalliEragrostis curvula23.3124.0794.55110forward
CNT30556718Echinochloa crusgalliPanicum hallii24.1525.4596.49114forward

Expression of CNT30580802

Peptides detected in this lncRNA

>peptide 1 (30 aa)
IGSLYRTVTREIENSRRRRYRNSLFSSRAR*

Sequence

>CNT30580802
ATTGGCTCTCTATATAGAACCGTGACGAGAGAGATAGAGAACTCGCGCCGCCGCCGCTATCGCAACTCTCTCTTCTCCAGCCGCGCCCGGTAGGAGTCGC
GCCAGCGAGCGAGCTCCCCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGCGAATGAGGCGACTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGGTCCAA
GTAGACAAATTTGTGGATGCCTGGGTGTCTGCTAGTAATTCAGTTGGGGTTGCAGTTTACTAATCAATTTTAGTTTCCATTAGTACAACGGGTTGTGTAA
TGTATCTGAAACCATTGTGATCAGTGTCTGTCTTTGATATGTAATGAAGACCATGATCATCTTAAATTTTGAATATCATCCTGAAACGTTTTTCGGAGAA
TAATCACCACTTGATGATGATTGAAACGTTTGTTTCTAGGTTTGTTATTGCTCGTTGGTTAATCGTATCTGG