Detailed information on CNT30579950


BLAST search results

BLAST vs Swiss-Prot:
sp|O04133|SRC2_SOYBN, E-value = 8e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522749Echinochloa crusgalliSetaria italica81.1677.9793.031090forward

Expression of CNT30579950

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSPIRSPPTAPPSSPAPSPIPKLFFFFCGFTACCWYPYPACGGYPYPPYPACGGGGG*

>peptide 2 (34 aa)
FGANENRNKTAIHIMSHICCIIFTLPYQKIRCMI*

>peptide 3 (30 aa)
MAAERTRRLSGGDERESRWIGWFFLPKLITW

>peptide 4 (63 aa)
MCTSPTSRSPRARSARRRTWREPAPVAGTLKRSVAFQVGLRPPVRSAWIRCRERGSPESETTA*

>peptide 5 (82 aa)
MAGSRMGAGKRLMAPRPCQRPDRRWEAGTRRPWLPAGRRREAGTNRPCLPAGRPMEAGTRRQVEAGCTRIGRRWERTRRPIG*

Sequence

>CNT30579950
ATTCGGTGCAAATGAGAACAGAAATAAAACTGCAATTCATATAATGTCTCACATTTGCTGCATCATATTTACATTACCATATCAGAAGATAAGATGCATG
ATTTGATTTGGTCCTGACAGTTGAGTAGTACGCACGTACTCCAGTAGAAACGAAACATATCACAAACGCAAATCCAAAACAAAAATAACTCTGCTGCAGT
ATCCTCTCATCGGAGCGCTCTAGAAGTCAAATCCACCGTCGAAGCCGGCGTCGTAGCCGGCATCGTACGCCGACGAGTCCGAGATCATGTCCCCGATCAG
GAGCCCGCCGACGGCGCCTCCGAGCAGCCCGGCACCGAGCCCCATCCCGAAGTTGTTCTTCTTCTTCTGCGGCTTCACGGCCTGCTGCTGGTACCCGTAC
CCGGCCTGCGGCGGATACCCGTATCCGCCGTACCCGGCTTGCGGCGGCGGGGGCGGGTAGCCGTAGCCGGCGGGCTGCTGCTGTGGGTAGCCGTAGCCGT
ACTGCGGCGGAGGAGCACCGCCGTAGGGAGCCCCGGTGCTGGGGCCGGCGGCAGGGTAGGCTGTCACTGGCTCACCGGCCTTTGCCGGCTTGCCCGAGGA
TGGCGGGTAGCCGGATGGGGGCGGGTAAGCGGTTGATGGCGCCTCGGCCTTGCCAGCGGCCGGATAGGCGGTGGGAGGCGGGTACGCGTCGGCCTTGGCT
GCCGGCGGGTAGGCGGAGGGAGGCGGGTACGAATCGGCCTTGCCTGCCGGCGGGTAGGCCGATGGAGGCGGGTACGCGGCGGCAGGTGGAGGCCGGCTGT
ACGCGGATTGGGCGGAGGTGGGAGCGTACCCGGCGGCCGATTGGGTGACCTCGCCGAGCTTGTACGAGAAGTTTAGCACTCCCTGTGCCTTGCCGGAGGA
GATCTTGCGGACCTGGTAGGCGACGAACTTGGAGGGGACGGAGCCGTCGGGGGCGCCGGAGAGGAGCTCGGAGAGCGGGATGTGTACCTCGCCGACGTCG
CGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGGACGTGGAGGGAGCCCGCGCCGGTGGCCGGGACGTTGAAGCGGAGCGTGGCGTTCCAGGTGGGGTTGC
GGCCGCCGGTGCGGTCGGCCTGGATCCGCTGCCGCGAGCGCGGGTCGCCGGAGAGCGAGACGACGGCGTAGACCTCCATCTTGGAGAGCAGGTTCACCTC
CTTGAGATCCTTGGCCGAGATCAGCGTCAGCTCCAGCGTCCTCGTCGCCATGGCTGCTGAGAGAACCCGCAGACTTTCCGGTGGAGACGAGAGAGAGTCA
AGATGGATCGGTTGGTTCTTCCTTCCAAAATTGATCACTTGGG