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Detailed information on CNT30579587


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AWY2|GRF7_ORYSJ, E-value = 1e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30448603Echinochloa crusgalliSaccharum spontaneum22.0725.6293.37166forward
CNT30340693Echinochloa crusgalliEragrostis tef46.144.4187.61347forward
CNT30116324Echinochloa crusgalliOryza nivara22.3420.2289.29168forward
CNT30593969Echinochloa crusgalliEragrostis curvula46.1440.6386.74347forward
CNT30603884Echinochloa crusgalliOryza punctata22.3411.7488.69168forward
CNT30558858Echinochloa crusgalliPanicum hallii54.1225.9493.86407forward

Expression of CNT30579587

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSSLGEPEHLLLVKEGGGVRSNDSSSLGEACSLEEAEVALPGRLRGAGDPLLQTHHFS

>peptide 2 (37 aa)
MVKGVPRQKRKDNTHIHPRTCRSITILFYPAYEPKKK*

>peptide 3 (46 aa)
MGAFAWRYLYIRAWCSSSIHCEGVKGLLVVDSRKACSFGLPKSKPR*

Sequence

>CNT30579587
CTTGAACGGTGACGGTTTCTGTTGATGTGCCGCTCACAGTACTTGTGATCAGCCATTGCTTCCTTGGAGCATCGCCATTTCTTTCCATCTGTTCGACGGC
ATCTTCCAGGTTCTGGATCAGAGTCTGCATTGGTGTAACCTTGATAGAGAGGTCTCCAGCTAACTGCATTTGAGAAGCTGGAAGGTATGGGGGCCTTTGC
ATGGAGATACTTGTATATCAGGGCCTGGTGCTCCAGCTCCATCCACTGCGAGGGAGTAAAGGGCCTCTTGGTCGTGGATAGCAGGAAAGCCTGCTCATTT
GGCCTTCCAAAATCCAAGCCTAGATGATGATGAAACAAGGAGAATATTTTAGTCTGACGAGACCTGAAAACTGCTGAGGCAAGCAGCAACCTTATCTCCA
GAGACATGCATGGTGAAGGGAGTGCCAAGACAAAAGCGTAAAGATAACACACATATCCATCCAAGAACATGCAGGAGCATAACAATTTTGTTCTACCCTG
CTTATGAACCGAAGAAGAAATGAGACACGAGGGAAGGCTTGTGTTGCCGATGAGGCATGCGAACCTGAGGGCAATGCATGAGCAGCCTTGGAGAACCTGA
GCATCTTCTGCTCGTCAAGGAAGGGGGAGGGGTAAGAAGCAACGACAGCAGCAGCCTGGGTGAGGCCTGCTCGCTTGAGGAGGCCGAGGTCGCTCTCCCT
GGCCGACTGCGCGGTGCCGGCGATCCCCTGCTGCAGACCCATCACTTCTCCG