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Detailed information on CNT30579496


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 4e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Echinochloa crusgalliSetaria italica10052.1395.65391forward
CNT30703138Echinochloa crusgalliQuercus lobata54.9941.0384.65215forward
CNT30615836Echinochloa crusgalliSesamum indicum43.4844.3981.76170forward
CNT30729539Echinochloa crusgalliCorchorus capsularis79.5446.2879.1311forward
CNT30524728Echinochloa crusgalliPhaseolus vulgaris64.7146.8581.42253forward
CNT30486152Echinochloa crusgalliOlea europaea54.2223.4382.55212forward
CNT30506399Echinochloa crusgalliNicotiana attenuata67.7780.0680.38265forward
CNT30223417Echinochloa crusgalliHordeum vulgare57.2998.6890.62224forward
CNT3084565Echinochloa crusgalliVigna radiata67.2615.5679.09263forward
CNT30510767Echinochloa crusgalliSolanum lycopersicum22.7610.5884.2789forward
CNT30143836Echinochloa crusgalliMedicago truncatula37.8525.3982.43148forward
CNT30447453Echinochloa crusgalliSaccharum spontaneum96.4265.7993.9377forward
CNT30343308Echinochloa crusgalliEragrostis tef68.5497.8190.67268forward
CNT30570592Echinochloa crusgalliVitis vinifera48.8559.1386.91191forward
CNT30645151Echinochloa crusgalliCannabis sativa59.5924.4580.26233forward
CNT30499107Echinochloa crusgalliDigitaria exilis99.4999.4993.06389forward
CNT30174824Echinochloa crusgalliVigna angularis98.4740.5380.26385forward
CNT30336663Echinochloa crusgalliCynara cardunculus41.4334.6983.95162forward

Expression of CNT30579496

Peptides detected in this lncRNA

>peptide 1 (36 aa)
HLWDLHGPNSSPSEDAQEDHHTPRWYSSAKTGPPPS*

>peptide 2 (48 aa)
TYGIYMAPIALLLRMLKRITIHLAGTRQQKPGPHPLSQSKHVQGPHDI*

>peptide 3 (33 aa)
MRDVVLAAREEVVHDDDAVPTGEELVDEVASDEP

Sequence

>CNT30579496
ACACCTATGGGATTTACATGGCCCCAATAGCTCTCCTTCTGAGGATGCTCAAGAGGATCACCATACACCTCGCTGGTACTCGTCAGCAAAAACCGGGCCC
CCACCCTCTTAGCCAGTCCAAGCATGTTCAAGGTCCCCATGACATTTGATATGATGGTCTTGATGGGGTTGAATTTGTAGTACACGGGGGATGCGGGGCA
AGCGAGGTGGTAGATCTGGTCGACCTCGAGGAGGATTGGCTCGACGACGTCGTGGCGGATGAGCTCGAATCGTGGATTGCGGAGGTGATGCGCGACGTTG
TCCTTGCGGCCCGTGAAGAAGTTGTCCACGACGATGACGCTGTCCCCACGGGCGAGGAGCTTGTCGACGAGGTGGCTTCCGACGAACCCAG