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Detailed information on CNT30578505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002853, E-value = 2e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690868Oryza barthiiOryza sativa28.0936.5692.69438forward
CNT30596746Oryza barthiiOryza meridionalis21.8126.2592.94340forward

Expression of CNT30578505

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVATTTAAAAACVVLHDQNETWVGNDSHKLFYPWWILYW*

>peptide 2 (37 aa)
MISISTIYMHNICDAYCIRFLECNYMHVCMQTCSGKL*

>peptide 3 (71 aa)
THLTHLLALLSFSRSFPLPPVFPLSLPRSPLPGARALPSQGASPPLPPPPCSNPNRRSPTAAAAGKTPASD*

>peptide 4 (53 aa)
PPNPPSCSSLFFSFFSSSTRFSPFSSSLSSPWRTSAALPGRIAAASSSPLFKP*

>peptide 5 (30 aa)
MVTTTVGSCIGLSWTSVELFLSGWSLVHSS*

>peptide 6 (32 aa)
MVLFGAPYPNMAAPATLAPCPCHRGTRAVVEVL

Sequence

>CNT30578505
ACCCACCTAACCCACCTTCTTGCTCTTCTCTCTTTTTCTCGTTCTTTTCCTCTTCCACCCGTTTTTCCCCTTTCTCTTCCTCGCTCTCCTCTCCCTGGCG
CACGAGCGCTGCCCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCCCCCCTGTTCAAACCCTAACCGTCGGTCTCCTACTGCTGCAGCCGCCGGCAAAAC
TCCGGCGAGTGATTGAAAAATGTGTGGTTCAGCTCCTCCTTCAGAAATCCAAGTCTTCTCTTCTACTTCTGCCCTTCTGGATCTAAGGTGATTTTGCTAG
AACTGAGCTTCTCCACCTTGAGCTTGGTTGATTGTTTCCCCCTCTTGAACTGGACCCCCTGCACTATTTGGAACTCAGATTTGGTTCACCACTCTCTGAT
TGCTTGGCCATGGTTACTACTACTGTTGGTTCATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTCTCTGGTTGGAGCTTGGTTCACTCTAGCT
GATTTTCCTAGAGCTTGGTTCTATGGTTGCAACTACTACTGCCGCAGCTGCTGCCTGTGTTGTTTTGCACGACCAAAACGAGACCTGGGTTGGAAATGAT
TCACACAAATTATTTTATCCCTGGTGGATATTGTACTGGTGATTCACCTGCTTGCATGGCTATTCCCATCCTGTACTTGTGACACCTCAACATGGCTTGT
TCGGTGGGATAACCTAGAGCTATTTGTTAATTTCCCTAATTAATGGAAAATTGGTAGAGTCTGATGTGTTTGATACCTTTGCACTTGAATCCCTCAAGTA
TGGTAAAATTGTAAATTACTACGAATTTAGGAACTGATATGCAATTGCCCTAGAACTCAAGAGTTTTTCTGAAAAATAAATAATTATAGAATATTTGACT
GAGATGGTTCAGTTTCTGATATGATATCTATAAGCACCATATATATGCACAATATATGTGATGCATACTGTATAAGATTTCTAGAGTGCAATTATATGCA
TGTATGTATGCAGACCTGTAGTGGTAAATTGTAAATAAAGAACTGTGGTTTCTACTGTGCACATGTGTACCTCATTTCGTGACGACTAATCTATGCTATA
ATTTAACCAAAACTAAATTATCCCACTCCTCACCAGGTTTACAACTAAAAATAATGATGCATATGGATATGACTTGATAAATAAATGACAAGGAAACGAT
CGAAAAATCATTTAAGATCCATCATAGAATAACAATCAACATATTTATAGGTCCTAGCCAGCATCGTGGCTCAATCGACACCACTCTCAGCCAGTGTGAC
CAAGTCATTAGTGGGACTAAGACTATAGCTAACACCCGGATGTTACAAATTTGGAATTTAAAATAAGCAATATTGAAAGAAGATTTGAAATTTTTATATT
TTGGTCCTTTTTGAAAACTTATTTTACAAATAGACCCTTGGGAAAACATAAACCGGAAATGGTCCTTTTTGGGGCGCCATACCCCAACATGGCGGCGCCA
GCCACACTGGCACCGTGCCCGTGCCACCGTGGCACTAGGGCTGTCGTGGAGGTGCTGAC