Detailed information on CNT30578322


BLAST search results

BLAST vs Swiss-Prot:
sp|P93431|RCA_ORYSJ, E-value = 7e-37

BLAST vs NONCODE:
NONORUT001926, E-value = 1e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617968Oryza barthiiSesamum indicum78.1672.5283.23161forward
CNT30524743Oryza barthiiPhaseolus vulgaris76.720.4780.38158forward
CNT30712394Oryza barthiiGlycine max51.466.6385.85106forward
CNT30296535Oryza barthiiTriticum aestivum75.2415.8689.68155forward
CNT30223103Oryza barthiiHordeum vulgare59.7149.489.43123forward
CNT30438762Oryza barthiiAegilops tauschii53.8854.4190.09111forward
CNT30663145Oryza barthiiTriticum dicoccoides62.6227.4590.7129forward
CNT30469250Oryza barthiiSaccharum spontaneum79.6127.8985.37164forward
CNT306857Oryza barthiiZea mays43.694.2391.1190forward
CNT30365435Oryza barthiiSorghum bicolor79.6121.3885.98164forward
CNT30622272Oryza barthiiCajanus cajan51.467.5386.79106forward
CNT30642662Oryza barthiiCannabis sativa51.4620.6682.08106forward
CNT30326483Oryza barthiiAsparagus officinalis57.7712.2484.03119forward
CNT30498436Oryza barthiiDigitaria exilis80.133.9588.48165forward

Expression of CNT30578322

Peptides detected in this lncRNA

>peptide 1 (67 aa)
VRSETLAEVLVGAEDGLVGAITRGSLEKGVDETLPPGDVLLVIGDVVGETLPPVLVGLLALPPGAVLL

Sequence

>CNT30578322
CGTACGTTCTGAGACCCTGGCTGAGGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCATCACCCGTGGGAGCCTGGAAAAGGGAGTCGACGAAACC
CTTCCCCCTGGTGATGTCCTGCTGGTCATCGGAGATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTTCCCCCTGGTGCTGTCC
TGCTGG