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Detailed information on CNT30578218


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555393Oryza barthiiOryza glaberrima98.0482.19100752forward
CNT30371378Oryza barthiiOryza glumipatula92.9610099.44713forward
CNT30115732Oryza barthiiOryza nivara37.2978.5798.95286forward

Expression of CNT30578218

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSQKICLLERCCSTGIGSTLKQIGSHVIRGIAG*

>peptide 2 (96 aa)
MVGGELVSAFLVDLHADYCEKSSLSGQLVCHYCYFQNYVTKNLSAREMLLHWHRKHPKADRIPCNQRNCGVIVSSPRELELHVHFSHVQPAGWWVL*

>peptide 3 (99 aa)
LASRPARPNYSPSPNLREASRRRRRLPVATGGDDAYCERKRCDASRRRRRSELGGSDKPTTAAGGGVGGSERHGDASSRWRLKRAKAAWPLQRAADGWR*

Sequence

>CNT30578218
TCTGGCTAGCCGTCCGGCCCGTCCCAACTATTCCCCATCCCCAAACCTACGGGAGGCGAGCAGGCGGCGGCGGCGGCTGCCTGTAGCGACCGGAGGCGAC
GACGCTTATTGCGAGCGGAAGAGGTGCGACGCGAGCAGGCGACGACGACGCAGTGAGCTGGGAGGCAGCGACAAGCCGACGACTGCAGCAGGCGGAGGCG
TCGGAGGCTCGGAGCGTCACGGTGATGCAAGCAGCCGGTGGCGGCTGAAGCGAGCGAAGGCGGCGTGGCCGCTTCAACGAGCAGCTGATGGTTGGAGGTG
AGCTGGTTTCTGCATTCTTAGTCGATCTGCACGCGGACTACTGCGAGAAATCAAGTTTGAGTGGCCAATTAGTTTGCCACTACTGCTACTTTCAAAATTA
TGTCACAAAAAATCTGTCTGCTAGAGAGATGTTGCTCCACTGGCATAGGAAGCACCCTAAAGCAGATCGGATCCCATGTAATCAGAGGAATTGCGGGGTG
ATAGTAAGCTCTCCCCGTGAGTTAGAGCTACACGTCCACTTCTCCCACGTCCAGCCTGCGGGTTGGTGGGTATTGTGATCAACTGAAAGTTCGGCATGTT
TTTGGATTGGTTCCTTGCTAACTATTGGATTAGTTCCTTGCTTACTATTCTTATGTTAACACCGATATCTGTAACCCCTTAATCATAATATCATAATTTG
ATTTGATTGCGTACTCTAAATGTGTTGAATGACATGCGCGTGTGACTAAAGTGATTACTGATTAGTA