Detailed information on CNT30577462


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002720, E-value = 6e-135

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30603604Oryza barthiiOryza punctata65.335091.7277forward

Expression of CNT30577462

Peptides detected in this lncRNA

>peptide 1 (38 aa)
ARYVGSPILGDKKNDIWVPKALVSNLQGLKQVWVPKRA*

>peptide 2 (42 aa)
LDMWVPLYLVIKRMTFGCPKLWSLTSKDSNKFGYLKELNLLL*

>peptide 3 (78 aa)
MTGDRAMFTTFEVGRKEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSLVKSLNFNLLSVAQICDLGLSCAFFPQEVI

Sequence

>CNT30577462
GCTAGATATGTGGGTTCCCCTATACTTGGTGATAAAAAGAATGACATTTGGGTGCCCAAAGCTTTGGTCTCTAACCTCCAAGGACTCAAACAAGTTTGGG
TACCTAAAAGAGCTTAATCTTCTTTTATAGGTGAACTACCGCACCGGTGGGAGCCATTGGGTGCTTGATAGTGGATGCACTCAACACATGACCGGTGATA
GGGCTATGTTCACCACATTTGAAGTAGGACGAAAAGAACAAGAGAAAGTGACATTTGGAGACAATAGCAAAGGAAAGGTAATTGGGTTAGGTAAAATTGC
TATCTCCAATGATTTATCAATTGATAATGTCTCTCTTGTTAAATCTCTAAATTTCAATTTGCTTTCGGTTGCTCAAATTTGTGATCTTGGCTTGTCATGT
GCTTTCTTCCCGCAAGAAGTTATT