Detailed information on CNT30577459


BLAST search results

BLAST vs Swiss-Prot:
sp|P51059|CAPP2_MAIZE, E-value = 3e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673726Oryza barthiiSetaria viridis19.0324.8785.7198forward
CNT30316271Oryza barthiiCorylus avellana18.4525.8984.2195forward
CNT309351Oryza barthiiZea mays20.7823.8385.98107forward
CNT30216754Oryza barthiiKalanchoe fedtschenkoi18.8322.0589.6997forward
CNT30364315Oryza barthiiSorghum bicolor14.9524.0687.0177forward
CNT30596912Oryza barthiiOryza meridionalis53.5965.8786.59276forward
CNT30148536Oryza barthiiBrachypodium distachyon15.9238.3286.5982forward

Expression of CNT30577459

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MFLYNSIIENIFRKKLETARASASAKLNGREQMTEIKIRVHKKRCEFRHFIVDSSLSRCSAFQQQFPSWSG*

>peptide 2 (43 aa)
MVRMRVSSSPGAYSLVGFSFTSSAAGLDQSMISLDMWGRSVTW*

>peptide 3 (50 aa)
MVVRVADSLHRVSLADIQGGDVGIAEAKALLQVEITFEKILAPEGEAVWFL

Sequence

>CNT30577459
TGAACATAATATCCACTTTATTTTGATTAATTGATGTTCTTGTACAACTCCATTATTGAAAATATCTTCCGAAAGAAATTAGAAACTGCACGAGCCTCTG
CATCGGCAAAATTAAATGGCCGAGAGCAAATGACCGAAATCAAGATAAGAGTCCATAAAAAACGGTGTGAATTCAGGCACTTCATAGTTGATAGTTCGCT
TAGCCGGTGTTCTGCATTCCAGCAGCAATTCCCTTCATGGTCAGGATGAGGGTGTCCTCCAGCCCCGGCGCATACTCACTGGTCGGGTTCAGCTTCACCA
GCTCCGCAGCCGGCTTAGACCAGTCCATGATCTCCTTGGACATGTGGGGGCGCAGCGTGACATGGTAGTCCGGGTCGCGGATTCGCTTCATCGTGTAAGC
CTGGCAGACATTCAGGGTGGTGATGTAGGCATTGCGGAGGCGAAGGCGCTGCTTCAGGTAGAGATCACCTTCGAGAAGATCCTTGCACCTGAAGGAGAAG
CTGTTTGGTTTCTTC