« Back to Oryza barthii search


Detailed information on CNT30577243


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001778, E-value = 1e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104049Oryza barthiiOryza rufipogon84.4288.2691.63466reverse complement

Expression of CNT30577243

Peptides detected in this lncRNA

>peptide 1 (49 aa)
EHHSTGILDGTDEAYSSEKPPSDTYSYSGVGENRARLSTTHCTQQVIPE*

>peptide 2 (36 aa)
NTTPQASSTARTKPTPRRNHHLTHTRTLGLGKIEQD*

Sequence

>CNT30577243
GGAACACCACTCCACAGGCATCCTCGACGGCACGGACGAAGCCTACTCCTCGGAGAAACCACCATCTGACACATACTCGTACTCTGGGGTTGGGGAAAAT
AGAGCAAGACTGAGTACTACCCACTGTACTCAGCAAGTCATACCGGAATAGGGGTATGATGTAGGGAATTATCAAAGGAGAGCTAGAGTGGTTCATTTGC
ATAAAGCGAGCATTTATAAACAGAAGTTGAAAGAATTAAACAGTTGTAATAATTAATCAATATTATTCTTCCACTGTCCAACGCTATACCACGCTGCAAC
AGGCCCAACCATCCACCTATACTATCCAATTTCATTAGACTAAACTAGGGTGAGACTAATCACGGTGAATCTGGTTGACCGCCCATAACCGCGGGCACGG
CTATTCGAATAGTTTTACTCTGATCAGAGGTGTACCACTGTACCCACAAGACACAGCCCCACGACATGTCACCATGCGCCTTGATACCACCACGGTACCT
CAGAAAGGAGCTGTGACAGTACCCCTCGCACAACACAATCCACCACAGCGCA