Detailed information on CNT30577149


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694885Oryza barthiiOryza sativa13.5226.8797.35151forward
CNT30660860Oryza barthiiTriticum dicoccoides6.8926.8387.0177reverse complement
CNT30117144Oryza barthiiOryza nivara28.6551.5396.88320forward

Expression of CNT30577149

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSMTEATAAAGKNSFPARAPQEAPKGTTGRSISKGIRRPRKLRRLRLQQAGEPLCEAVRDVLARTR*

>peptide 2 (41 aa)
PQLLCVFLSLAYSSSETLCASIPALVTASLVLFTCAHRYTG*

>peptide 3 (55 aa)
MFWRGRGDFAWGGEAIRSDLEGGGEPLDRHHQMIFDRWMCHTMNEKNHSLNYRVD*

>peptide 4 (35 aa)
MLFCKIIEADEARGEEHRGPWDDPVRLLACLKTIS*

>peptide 5 (57 aa)
PAALCLPFSRLLFLGNSLCLYSCASHCFPGPIHLCTQVHGMRRCLRNAVRLRIYTGR*

Sequence

>CNT30577149
CCCCAGCTGCTCTGTGTCTTCCTTTCTCTCGCTTACTCTTCCTCGGAAACTCTTTGTGCCTCTATTCCTGCGCTAGTCACTGCTTCCCTGGTCCTATTCA
CCTGTGCACACAGGTACACGGGATGAGAAGGTGCCTCCGAAACGCTGTCCGCTTGAGAATCTACACGGGTAGGTAAAACGAACAAGTTTTTGGGGAGCGT
CTCGGCGGACTGCTCCTGTTCTGCTTCGACTACGCTGCATCCTTTTTGTCAGGCTCTCCTTCCTCTGCAACGCCATGTCGACCGTCAACACCGACACCAA
CACCCGCACCAGTACTGGAGAAGGTTGATGATGCGCTGATGGCTAGCAGCTGGCAACTGAGGAAAATTGCTATATGCGAAACAATCTTCATGTTCTGACT
TGAAAGTTCAAGACAATGTTATTTTGCAAGATAATAGAGGCTGATGAAGCACGGGGCGAAGAGCATCGTGGTCCCTGGGATGATCCCGTCAGGCTGCTCG
CCTGTTTGAAAACCATTTCTTGAATGATGCATTTACCACGGACGCCCCAATCTCTACGCCAGCCTGGCCGAGCCTCCTGCCGATGTCGATGACGGAGGCG
ACGGCCGCGGCGGGGAAGAACTCCTTCCCGGCCCGGGCACCCCAGGAGGCGCCGAAGGGGACCACGGGGAGGTCGATCTCGAAGGGAATCCGCCGGCCAC
GGAAACTGCGGCGGTTGCGCCTGCAGCAGGCCGGTGAACCCCTGTGCGAGGCGGTCCGTGATGTTCTGGCGAGGACGCGGTGATTTTGCCTGGGGAGGGG
AGGCGATCCGATCGGATTTGGAGGGAGGCGGGGAGCCGTTGGATCGACATCATCAGATGATTTTCGATCGTTGGATGTGTCACACGATGAATGAGAAAAA
TCATTCGTTGAACTATAGGGTAGACTAATAACCCCATCCTATACTTATCATTCTAAATAGTTTAGCACAAATTAAGATATGAGAAAGAGATTGTGGGTCA
TTTTGAATTGATGACAAAAATATGCTCTATCAATTTTTTTGGTAGTTTGAATAGTAAGTATGATGGTTTGTTTTGAAATCAAATAGAAGTAGATGGTAAT
GCCCATACTTAATTTTG