Detailed information on CNT30577129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694654Oryza barthiiOryza sativa96.493.7199.63536forward
CNT30554473Oryza barthiiOryza glaberrima96.485.35100536forward
CNT30369472Oryza barthiiOryza glumipatula96.493.8799.25536forward
CNT30102681Oryza barthiiOryza rufipogon96.495.299.63536forward
CNT30117222Oryza barthiiOryza nivara96.495.8999.07536forward

Expression of CNT30577129

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MCNACIIFFCILIYSTILLPLSYKKNHQN

>peptide 2 (40 aa)
MITSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

>peptide 3 (40 aa)
STLSMNAADSSLLAAPPTPPSRGQYRLRLLIAHLIASVEN*

Sequence

>CNT30577129
CTCAACCTTATCCATGAACGCGGCCGATAGCTCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGCTAAGATTATTGATTGCCCAT
TTGATTGCATCTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAGATTGAATTTGTGT
TTTTGAGAAGCCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTACGAGTCCTGACAATGGGGAGCCATTCCAGAA
CTTCCTGGTTGAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGCGTGATCATTCAGA
AACAGCGTGCTACAGATCAACACCAAAATTCCTAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTATATTTTTCTGCATT
CTAATATATTCGACAATACTCTTGCCGCTTTCATATAAAAAAAACCACCAAAATTC