Detailed information on CNT30577115


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004144, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189005Oryza barthiiSecale cereale18.5346.0890.21194forward
CNT3066762Oryza barthiiLeersia perrieri6.5927.3885.5169forward

Expression of CNT30577115

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MNYIKNKLRSKMGQEYLNDCLVTFIERDFFLQVKNEDIINHFQNIKKRKVLL*

>peptide 2 (91 aa)
MSSFSPAKSFSGFNVDNLVKLAKFYPNDFDVEEMNQLTFQLNRYISDVSKDENFTNLMSLTDLSMMLVKTNKVSRYTSQIGVSSPCCNCRC*

>peptide 3 (31 aa)
PALAPRRHRAHAPAQPPSRCTRAPRRRRLPS*

>peptide 4 (50 aa)
MYDEEQMLISLCPQCSHGSPLLSFSPVTWKSLVSGSRLCAGANNRHQKPS*

>peptide 5 (45 aa)
MIAWLHSLKEISSCKLRMKTSSIIFKISRNGKFFSKLDGKLPRGGS

>peptide 6 (34 aa)
ACARASPSPRARASPATFTVHARASPSPVAQLMS*

>peptide 7 (40 aa)
SLRSRLAVTARTRQPSHLHGARARLAVAGCPANELNPSLV*

Sequence

>CNT30577115
AGCCTGCGCTCGCGCCTCGCCGTCACCGCGCGCACGCGCCAGCCCAGCCACCTTCACGGTGCACGCGCGCGCCTCGCCGTCGCCGGTTGCCCAGCTAATG
AGCTAAATCCTTCTCTGGTTTAGCTTCATTGCAGTTTGTTTCTATTTGCCTTGATCTTTTTTACAACAATTTTAGAAAATGACTTGATGCTAGAAAAGTA
GTCTGATATGATGTTCTTACTAACTGAAGGCATTATATTGGCATTACAGTTACAGAAAACATGATAAAGCATGTTTGTATAGAAGCTCTCCTGTTTCATG
GAAATGGTTATTTAGAATTCTCAGGCTATAGAACTTTGTGCTTATGATTGTTCAGAATCTCAGATGTATGATGAGGAACAGATGTTAATATCCTTGTGCC
CACAGTGTTCTCATGGTTCCCCTTTGCTATCATTTTCACCAGTGACCTGGAAATCGCTAGTCTCGGGCTCTCGGCTGTGCGCAGGGGCAAATAACAGACA
TCAAAAGCCTTCTTAAGCCCTTTGTGCTCTAGCTTTATATTTTTGTTGCACATACTTAGATGCATGTCATCATTTAGCCCAGCAAAATCCTTCTCTGGTT
TTAATGTTGACAACTTAGTTAAGCTTGCCAAGTTCTATCCTAATGATTTTGATGTTGAAGAAATGAACCAACTCACCTTTCAACTGAACCGCTATATTAG
TGATGTAAGTAAGGATGAGAATTTCACAAATTTGATGAGTTTGACAGACCTATCTATGATGCTTGTGAAAACAAACAAGGTTTCTAGGTATACTTCTCAA
ATTGGTGTTAGTTCTCCCTGTTGCAACTGCCGGTGTTGAGAGGGTTTTCTCTTCAATGAACTATATCAAGAACAAGTTAAGAAGCAAGATGGGGCAAGAA
TATTTGAATGATTGCTTGGTTACATTCATTGAAAGAGATTTCTTCTTGCAAGTTAAGAATGAAGACATCATCAATCATTTTCAAAATATCAAGAAACGGA
AAGTTCTTCTCTAAATTGGATGGGAAGCTTCCAAGAGGTGGTAGTTC